Gene
RNA
| Item | Value |
|---|---|
| gene id | G433940 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 6051805 ~ 6054634 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU498234 | True | 1969 | lncRNA | 0.41 | 3 | 6051805 | 6054634 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_06048083_06049632 | NA | coding | downstream | 2173 | 6047839 ~ 6049632 (-) |
| CI01000306_05990444_06033972 | NCX, SLC8A1, SLC8A1A, SLC8A1B | coding | downstream | 17833 | 5989253 ~ 6033972 (-) |
| CI01000306_05902120_05929983 | MAP4K3A | coding | downstream | 121822 | 5901798 ~ 5929983 (-) |
| CI01000306_05891607_05897232 | PECR | coding | downstream | 154480 | 5891573 ~ 5897325 (-) |
| CI01000306_05888356_05890267 | TMEM169A | coding | downstream | 161439 | 5888069 ~ 5890366 (-) |
| CI01000306_06108667_06110250 | NA | coding | upstream | 53624 | 6108258 ~ 6110250 (-) |
| CI01000306_06244021_06244397 | NA | coding | upstream | 189301 | 6243935 ~ 6244397 (-) |
| CI01000306_06253870_06254391 | NA | coding | upstream | 198712 | 6253346 ~ 6256066 (-) |
| CI01000306_06273326_06277287 | NACC1 | coding | upstream | 217781 | 6272415 ~ 6277442 (-) |
| CI01000306_06289571_06299875 | MAN2B1 | coding | upstream | 234514 | 6289148 ~ 6300251 (-) |
| G433633 | NA | non-coding | downstream | 23748 | 6011659 ~ 6028057 (-) |
| G433628 | NA | non-coding | downstream | 164673 | 5885203 ~ 5887132 (-) |
| G433656 | NA | non-coding | downstream | 199406 | 5849758 ~ 5852399 (-) |
| G433595 | NA | non-coding | downstream | 235936 | 5758198 ~ 5815869 (-) |
| G433939 | NA | non-coding | upstream | 49205 | 6103839 ~ 6107564 (-) |
| G433948 | NA | non-coding | upstream | 84043 | 6138677 ~ 6139696 (-) |
| G434001 | NA | non-coding | upstream | 202371 | 6257005 ~ 6257347 (-) |
| CI01000306_06336883_06339725 | NA | non-coding | upstream | 284345 | 6336651 ~ 6341662 (-) |
| G434064 | NA | non-coding | upstream | 351891 | 6406525 ~ 6406767 (-) |
| G433670 | NA | other | downstream | 10522 | 6041014 ~ 6041283 (-) |
| G433450 | NA | other | downstream | 668042 | 5361643 ~ 5383763 (-) |
| CI01000306_04544349_04545034 | NA | other | downstream | 1506713 | 4542723 ~ 4545244 (-) |
| G432022 | NA | other | downstream | 3047914 | 3000236 ~ 3003891 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | downstream | 4302855 | 1717933 ~ 1726043 (-) |
| G433985 | NA | other | upstream | 141473 | 6196107 ~ 6197210 (-) |
| G434016 | NA | other | upstream | 300546 | 6355180 ~ 6361643 (-) |
| G434086 | NA | other | upstream | 382772 | 6437406 ~ 6452251 (-) |
| G434338 | NA | other | upstream | 812022 | 6866656 ~ 6866936 (-) |
| G436446 | NA | other | upstream | 3601645 | 9656279 ~ 9671776 (-) |
