G433939



Basic Information


Item Value
gene id G433939
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6103839 ~ 6107564 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU498233
AGCAGCGCACAAAAACAGTCATTTATTTCTCAAAATTATTCAAAACACATGAATATTTTAGCATAGTATGGTCACAGACATAAAAATCGATAAGCACAGAGAAAACTTGAAAAGGTTAAACAGGAGCTGCACTGGTCAATTTGACAGCCTCTGATTGGCCAGCTGGGCTGATGAGTGTGTGTCCCTGCGTTCCAGAAGGACAGTGGGAGGATCAGCTGGTTCTCATACCGTCCCTGCTGAGATGGCTTACTGGGTCTGGATTATTTGTTACCACGGTGGCGACATGGGCTGTGGGTTCTGCAAATACGACATCACGACTGCCGATATGGACAGCCTGAAGAACGTTCTCTGGAAGCTGAACATTGGTGGTCTCGGGCAGAAGGAAGACCACACCTCCACTGAAAACTGCAGTGGCAGCAAACACTACAGGCGGTGCAAAGCGCCATGTGTCCTCCAATAATATGACCATGGGGGCCAGTGAACCTCC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU498233 True 487 lncRNA 0.48 2 6103839 6107564

Neighbor


gene id symbol gene type direction distance location
CI01000306_06048083_06049632 NA coding downstream 54207 6047839 ~ 6049632 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding downstream 69867 5989253 ~ 6033972 (-)
CI01000306_05902120_05929983 MAP4K3A coding downstream 173856 5901798 ~ 5929983 (-)
CI01000306_05891607_05897232 PECR coding downstream 206514 5891573 ~ 5897325 (-)
CI01000306_05888356_05890267 TMEM169A coding downstream 213473 5888069 ~ 5890366 (-)
CI01000306_06108667_06110250 NA coding upstream 694 6108258 ~ 6110250 (-)
CI01000306_06244021_06244397 NA coding upstream 136371 6243935 ~ 6244397 (-)
CI01000306_06253870_06254391 NA coding upstream 145782 6253346 ~ 6256066 (-)
CI01000306_06273326_06277287 NACC1 coding upstream 164851 6272415 ~ 6277442 (-)
CI01000306_06289571_06299875 MAN2B1 coding upstream 181584 6289148 ~ 6300251 (-)
G433940 NA non-coding downstream 49205 6051805 ~ 6054634 (-)
G433633 NA non-coding downstream 75782 6011659 ~ 6028057 (-)
G433628 NA non-coding downstream 216707 5885203 ~ 5887132 (-)
G433656 NA non-coding downstream 251440 5849758 ~ 5852399 (-)
G433593 NA non-coding downstream 311608 5788815 ~ 5792231 (-)
G433948 NA non-coding upstream 31113 6138677 ~ 6139696 (-)
G434001 NA non-coding upstream 149441 6257005 ~ 6257347 (-)
CI01000306_06336883_06339725 NA non-coding upstream 231415 6336651 ~ 6341662 (-)
G434064 NA non-coding upstream 298961 6406525 ~ 6406767 (-)
G434073 NA non-coding upstream 306189 6413753 ~ 6414174 (-)
G433670 NA other downstream 62556 6041014 ~ 6041283 (-)
G433450 NA other downstream 720076 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1558747 4542723 ~ 4545244 (-)
G432022 NA other downstream 3099948 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 4354889 1717933 ~ 1726043 (-)
G433985 NA other upstream 88543 6196107 ~ 6197210 (-)
G434016 NA other upstream 247616 6355180 ~ 6361643 (-)
G434086 NA other upstream 329842 6437406 ~ 6452251 (-)
G434338 NA other upstream 759092 6866656 ~ 6866936 (-)
G436446 NA other upstream 3548715 9656279 ~ 9671776 (-)

Expression



Co-expression Network