Item | Value |
---|---|
gene id | G433939 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 6103839 ~ 6107564 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU498233 | True | 487 | lncRNA | 0.48 | 2 | 6103839 | 6107564 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000306_06048083_06049632 | NA | coding | downstream | 54207 | 6047839 ~ 6049632 (-) |
CI01000306_05990444_06033972 | NCX, SLC8A1, SLC8A1A, SLC8A1B | coding | downstream | 69867 | 5989253 ~ 6033972 (-) |
CI01000306_05902120_05929983 | MAP4K3A | coding | downstream | 173856 | 5901798 ~ 5929983 (-) |
CI01000306_05891607_05897232 | PECR | coding | downstream | 206514 | 5891573 ~ 5897325 (-) |
CI01000306_05888356_05890267 | TMEM169A | coding | downstream | 213473 | 5888069 ~ 5890366 (-) |
CI01000306_06108667_06110250 | NA | coding | upstream | 694 | 6108258 ~ 6110250 (-) |
CI01000306_06244021_06244397 | NA | coding | upstream | 136371 | 6243935 ~ 6244397 (-) |
CI01000306_06253870_06254391 | NA | coding | upstream | 145782 | 6253346 ~ 6256066 (-) |
CI01000306_06273326_06277287 | NACC1 | coding | upstream | 164851 | 6272415 ~ 6277442 (-) |
CI01000306_06289571_06299875 | MAN2B1 | coding | upstream | 181584 | 6289148 ~ 6300251 (-) |
G433940 | NA | non-coding | downstream | 49205 | 6051805 ~ 6054634 (-) |
G433633 | NA | non-coding | downstream | 75782 | 6011659 ~ 6028057 (-) |
G433628 | NA | non-coding | downstream | 216707 | 5885203 ~ 5887132 (-) |
G433656 | NA | non-coding | downstream | 251440 | 5849758 ~ 5852399 (-) |
G433593 | NA | non-coding | downstream | 311608 | 5788815 ~ 5792231 (-) |
G433948 | NA | non-coding | upstream | 31113 | 6138677 ~ 6139696 (-) |
G434001 | NA | non-coding | upstream | 149441 | 6257005 ~ 6257347 (-) |
CI01000306_06336883_06339725 | NA | non-coding | upstream | 231415 | 6336651 ~ 6341662 (-) |
G434064 | NA | non-coding | upstream | 298961 | 6406525 ~ 6406767 (-) |
G434073 | NA | non-coding | upstream | 306189 | 6413753 ~ 6414174 (-) |
G433670 | NA | other | downstream | 62556 | 6041014 ~ 6041283 (-) |
G433450 | NA | other | downstream | 720076 | 5361643 ~ 5383763 (-) |
CI01000306_04544349_04545034 | NA | other | downstream | 1558747 | 4542723 ~ 4545244 (-) |
G432022 | NA | other | downstream | 3099948 | 3000236 ~ 3003891 (-) |
CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | downstream | 4354889 | 1717933 ~ 1726043 (-) |
G433985 | NA | other | upstream | 88543 | 6196107 ~ 6197210 (-) |
G434016 | NA | other | upstream | 247616 | 6355180 ~ 6361643 (-) |
G434086 | NA | other | upstream | 329842 | 6437406 ~ 6452251 (-) |
G434338 | NA | other | upstream | 759092 | 6866656 ~ 6866936 (-) |
G436446 | NA | other | upstream | 3548715 | 9656279 ~ 9671776 (-) |