Gene
RNA
| Item | Value |
|---|---|
| gene id | G433724 |
| gene name | NA |
| gene type | unknown |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 6108611 ~ 6129778 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU498010 | True | 930 | TUCP | 0.46 | 3 | 6108611 | 6129778 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_06106248_06107449 | GM2573, CS056, WDR83OS | coding | upstream | 1073 | 6106143 ~ 6108175 (+) |
| CI01000306_06097961_06104051 | SLC22A7A | coding | upstream | 4274 | 6097590 ~ 6104337 (+) |
| CI01000306_06074861_06096200 | TTBK1, TTBK1A | coding | upstream | 12324 | 6074861 ~ 6096287 (+) |
| CI01000306_06055478_06066083 | NA | coding | upstream | 42198 | 6055478 ~ 6066413 (+) |
| CI01000306_06051975_06053165 | TMEM246 | coding | upstream | 53846 | 6051438 ~ 6054765 (+) |
| CI01000306_06139324_06242205 | CACNA1AB, CACNA1A | coding | downstream | 9546 | 6139324 ~ 6242205 (+) |
| CI01000306_06258779_06262616 | STX10 | coding | downstream | 127311 | 6257089 ~ 6264303 (+) |
| CI01000306_06281314_06288766 | TRMT1 | coding | downstream | 151236 | 6281014 ~ 6289053 (+) |
| CI01000306_06303064_06327102 | NA | coding | downstream | 172779 | 6302557 ~ 6327477 (+) |
| CI01000306_06355528_06390936 | SIPA1L2 | coding | downstream | 224930 | 6354708 ~ 6391189 (+) |
| G433128 | NA | non-coding | upstream | 102625 | 5996828 ~ 6005986 (+) |
| G433134 | NA | non-coding | upstream | 136505 | 5922225 ~ 5972106 (+) |
| G433123 | NA | non-coding | upstream | 199379 | 5907287 ~ 5909232 (+) |
| G432961 | NA | non-coding | upstream | 216319 | 5891860 ~ 5892292 (+) |
| G433120 | NA | non-coding | upstream | 217427 | 5890961 ~ 5891184 (+) |
| G433702 | NA | non-coding | downstream | 72165 | 6201943 ~ 6207505 (+) |
| G433683 | NA | non-coding | downstream | 123527 | 6253305 ~ 6254494 (+) |
| G433705 | NA | non-coding | downstream | 137863 | 6267641 ~ 6268956 (+) |
| G433709 | NA | non-coding | downstream | 139580 | 6269358 ~ 6270538 (+) |
| G433715 | NA | non-coding | downstream | 145593 | 6275371 ~ 6277148 (+) |
| CI01000306_05976516_05985251 | TMEM178A, TMEM178 | other | upstream | 122323 | 5975822 ~ 5986288 (+) |
| G432958 | NA | other | upstream | 448442 | 5658928 ~ 5660169 (+) |
| G432678 | NA | other | upstream | 1586075 | 4522182 ~ 4522536 (+) |
| G432583 | NA | other | upstream | 1780789 | 4326402 ~ 4327822 (+) |
| G434545 | NA | other | downstream | 989539 | 7119317 ~ 7119859 (+) |
| CI01000306_09225597_09230504 | NA | other | downstream | 3095787 | 9225512 ~ 9231333 (+) |
| CI01000306_09263755_09288503 | NA | other | downstream | 3144121 | 9263589 ~ 9289035 (+) |
| G435590 | NA | other | downstream | 3583071 | 9704707 ~ 9737144 (+) |
| CI01000306_09860935_09865155 | SH2D5 | other | downstream | 3730435 | 9860480 ~ 9865724 (+) |
