G433705


Basic Information

Item Value
gene id G433705
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6267641 ~ 6268956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497991
AGTGTCATATAAAAATCACAAAGTGTCAAATTCTTAGATCATGATAGCTGTTCGCAAATCCCCACATTGGCCATTTGTTAATAAAGTGTCACATTAAGTATTGATTGTTTTGATCATCACATTGGTAAAAATCAACTGAAACAATTCATTTTAGTTCGGAATAAATGCTATAACATTTCCTTATATTTGGCAGTTCAGAAACATTTAAAACCGCTGTGTACATTTTCTTCTGTTCAGGGGCTATTTAAAAAAAAAAAAAAAAAAGAATTAGAATTCATGAAGTCAAATTACAAGTTTTTTCTAAATCCTTTGCTGACCCTTATTGGCCAGGAGAAGTAACTGCATTGCAGTTCCCTTTTCTACCTACAGCATTTATGAAGTATGACACCAGGTGGCGCTCGTCCACGTGCCACTCTACATCATTCAAAGATCATCTTTACCAGCCATCTAATTCAGTAACAAAAATGATTCCTTAAAGACAGAAAAAAAGTAATATATATATAGCTTGCAGTGCATGAAGACCCAACTCCTTACATCTACGCTCCTTCAAAAACTCATCCATCCCATAAAAATGACATTTCAATACAGTAAATAACCTTTCAGCTGCCCTCATCCTTTCCCAGCACTTCAGTCATATTCAAAGCAAAAATATGGAGCTTCTCTTGATCCTAGCTATTGTACATTTCACAATGTTTCCTTACAAAATACTTGGCAACTCTACGGTCTATGTTAAAAATTAGTAGCATCTCAATGGCCAAGCACTATTCTAAAGCAGAACAAAACCATAGATAAGAAAAACAAAAGATAAATAGTTCGCCTTGCATTTTATTCCCCTTTATTTTTGTGGTTTTTATTTGTGAAAGTCTCAATTTGAAGCTTGACCTCAGTTCTTGTTGACTTGCATGATTCTTACTCAGAATACATGTAGCTTTAATTGATGAATTAAAAGACAAAAGACCATGAACACAGGGTGCGGGTCAGGGTTTGAACTTCTACACGGGGTAATTCCACTCCAGTTCATCGGGTTCAGAGATCAGCGCACATTGTGTACCCAATCTCACCAATGCACCACTGAGCAGAACATATTAAGAAGTGATTCATGAGTTCAGCCCCCATGGACATGCATGCGGGCTGCTTCCTAAAAAAACTCCTGGTCCCTCCCTGTGTGTCTAACATGATACCAAAAAAAATAAAAAATGTTATCAAGCTGTACATCAGAGGATTTAGCTCCTTATATGTACATTCCAAAAGGGATGAAGAAATGTCGACAGCTGTTATCTTTTTCTCTCTCCTATTTCAAATGATGCAATGAGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497991 True 1316 lncRNA 0.36 1 6267641 6268956

Neighbor

gene id symbol gene type direction distance location
CI01000306_06258779_06262616 STX10 coding upstream 3338 6257089 ~ 6264303 (+)
CI01000306_06139324_06242205 CACNA1AB, CACNA1A coding upstream 25436 6139324 ~ 6242205 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS coding upstream 160103 6106143 ~ 6108175 (+)
CI01000306_06097961_06104051 SLC22A7A coding upstream 163304 6097590 ~ 6104337 (+)
CI01000306_06074861_06096200 TTBK1, TTBK1A coding upstream 171354 6074861 ~ 6096287 (+)
CI01000306_06281314_06288766 TRMT1 coding downstream 12058 6281014 ~ 6289053 (+)
CI01000306_06303064_06327102 NA coding downstream 33601 6302557 ~ 6327477 (+)
CI01000306_06355528_06390936 SIPA1L2 coding downstream 85752 6354708 ~ 6391189 (+)
CI01000306_06426490_06435408 NA coding downstream 154819 6423775 ~ 6435558 (+)
CI01000306_06437636_06441233 NA coding downstream 167670 6436626 ~ 6441267 (+)
G433683 NA non-coding upstream 13147 6253305 ~ 6254494 (+)
G433702 NA non-coding upstream 60136 6201943 ~ 6207505 (+)
G433700 NA non-coding upstream 99326 6128651 ~ 6168315 (+)
G433128 NA non-coding upstream 261655 5996828 ~ 6005986 (+)
G433134 NA non-coding upstream 295535 5922225 ~ 5972106 (+)
G433709 NA non-coding downstream 402 6269358 ~ 6270538 (+)
G433715 NA non-coding downstream 6415 6275371 ~ 6277148 (+)
G433753 NA non-coding downstream 142200 6411156 ~ 6411558 (+)
G433765 NA non-coding downstream 160988 6429944 ~ 6430144 (+)
G433724 NA other upstream 137863 6108611 ~ 6129778 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 281353 5975822 ~ 5986288 (+)
G432958 NA other upstream 607472 5658928 ~ 5660169 (+)
G432678 NA other upstream 1745105 4522182 ~ 4522536 (+)
G434545 NA other downstream 850361 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 2956609 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 3004943 9263589 ~ 9289035 (+)
G435590 NA other downstream 3443893 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 3591257 9860480 ~ 9865724 (+)

Expression


Co-expression Network