G433709


Basic Information

Item Value
gene id G433709
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6269358 ~ 6270538 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497995
AGGTTTGGAACAACTTGAGGATGAGTAAATAATGGCAGAATTTTCGGTTGAACTATCCTTTTAACTTGGTCTTAAAATCTGAAAGTCAACATAAAATGGCATTTGCAATCCACTTTAATTCCACAATATGTTTGAATTGGAATATTCAGCAAGAGACAAAATGTAGGGCAGGATTTGATTTGATTTTAACAGCTTGAATATGATTGGATTTGGATCATTAAAATTGGTTGTTCTACACCAAAATTGGAGCCAAATGTAAAAGCAAATCTGAAGTCGACTGTAAAGAGAGGATGCATTAGCATTAACACGAACATTAAATGAGTGGTTTTAGAAACAAAGCAAGTTATTTCAAAGCAATTTTTTTTTCATTCCATTTAAAAAAAAAACATTTGTCATTTTGGAATAACATCATTCACAATAACAGCAGGGGCCTCATGAATAAATGTTGCATAAGCACAAAATAGGCATTGAAATGGATGAATCATTCACAATAATATCTAATATATGCATTTAGAAAATAGAGAAGGTGAATTTTAATTTCATGCCAACTTTAAATGCAGTAGGAAGATATTACCTGGATAATAATATGCAAATGTAAATTACATGCAAATTAGGCTATGCATAATAAAAAGCTTTTTACATTCCATATATGGTTATTTAAAAGAGAAGATGAGGTGGAAGTTGGAGGTATAAATCTGACACCTTTTGATAATACTCAAAATCTGCTCTGTGTGTGTGTATAAACTCTATGCAGAGTTTTATACATGAGACCCCAGAAACGTATTAAAAAGAATCAATTTTGATTTCATGCTAACTCTACGATGACGAAACCAAACCAATGGAGCCAAACCAGATTAGATTCAATGCGAGCTGATGTTTGTTTAATCAAAGCGTACCGTTTGATGCCTCCATTTGGGAAATGGCTCACTGCACCAGTTGTGTGTTTAAGTGTGTGTGTGTGTGAGCATCCATCTCCTCACCAATACATTCCCTCCCCTCTCTGCTTGCGTCTGCACTGTATGTCTCCCTCTCTGAGTCAGACAAAAACAAACAGAGCTCTCTGATCTCTGCATACACACATACCAACCACCCACCCATCCATCAACCCACACACAAAATGCACATATTCCACAGTCAAACACCAACACCACCTACGCACGCTCTCTCAGACATGCTTTTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497995 True 1181 lncRNA 0.36 1 6269358 6270538

Neighbor

gene id symbol gene type direction distance location
CI01000306_06258779_06262616 STX10 coding upstream 5055 6257089 ~ 6264303 (+)
CI01000306_06139324_06242205 CACNA1AB, CACNA1A coding upstream 27153 6139324 ~ 6242205 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS coding upstream 161820 6106143 ~ 6108175 (+)
CI01000306_06097961_06104051 SLC22A7A coding upstream 165021 6097590 ~ 6104337 (+)
CI01000306_06074861_06096200 TTBK1, TTBK1A coding upstream 173071 6074861 ~ 6096287 (+)
CI01000306_06281314_06288766 TRMT1 coding downstream 10476 6281014 ~ 6289053 (+)
CI01000306_06303064_06327102 NA coding downstream 32019 6302557 ~ 6327477 (+)
CI01000306_06355528_06390936 SIPA1L2 coding downstream 84170 6354708 ~ 6391189 (+)
CI01000306_06426490_06435408 NA coding downstream 153237 6423775 ~ 6435558 (+)
CI01000306_06437636_06441233 NA coding downstream 166088 6436626 ~ 6441267 (+)
G433705 NA non-coding upstream 402 6267641 ~ 6268956 (+)
G433683 NA non-coding upstream 14864 6253305 ~ 6254494 (+)
G433702 NA non-coding upstream 61853 6201943 ~ 6207505 (+)
G433700 NA non-coding upstream 101043 6128651 ~ 6168315 (+)
G433128 NA non-coding upstream 263372 5996828 ~ 6005986 (+)
G433715 NA non-coding downstream 4833 6275371 ~ 6277148 (+)
G433753 NA non-coding downstream 140618 6411156 ~ 6411558 (+)
G433765 NA non-coding downstream 159406 6429944 ~ 6430144 (+)
G433706 NA non-coding downstream 190668 6461206 ~ 6462044 (+)
G433724 NA other upstream 139580 6108611 ~ 6129778 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 283070 5975822 ~ 5986288 (+)
G432958 NA other upstream 609189 5658928 ~ 5660169 (+)
G432678 NA other upstream 1746822 4522182 ~ 4522536 (+)
G434545 NA other downstream 848779 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 2955027 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 3003361 9263589 ~ 9289035 (+)
G435590 NA other downstream 3442311 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 3589675 9860480 ~ 9865724 (+)

Expression


Co-expression Network