G434086


Basic Information

Item Value
gene id G434086
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6437406 ~ 6452251 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU498394
GTGTTTAATCCAGAATTTTTATTGTAGGAGATTTTCAAGTTTGCTACAAATGCAGTGAAGAAGATTGTGTGAAACTGGTGATTTACGATGGAATCACAGTTCAGTAGTGCCCTCAATGATAAATACATAGTGACATATTTACCCCCTCTGTATTGGAAAAAGAACTGGAAGAGCTTTCATTTTTAATATAGCGTCTGAATAATTTCTTAAGATTCACTTTCTATTGAAAGGCAGGTGCGGATATAGGCATCACCTGAGGGTCAAAGGTGACGCGTCTTCCCGTCTAAAGTGACAGATCTGAGTTTTAACCTAATCCATAAAACATTTTTTTTTAATTAGCACAAAATTACTGAGCGTACCTTTAAGTGTCATGCACCACTGCTCTCCTCTATGACAGCTCTACTTACTTTTGTTCTTCCATTGATCCTGTAGTTGCCCAGTTTCCCGTTACAGTGTCGGATCAGATCGTCCATGCGACTCATGAGAAACGCTATCCTTTCGCATCCCGGCTCCTTTCCCTCCACCCAGGTGATCTTATCCCCCCGAATGTCCTTAGACGAGTCGCTCCTCTGACTGACCAGCTGTCCGTCTGTAAAGCCGCCGGTCAAGTAAAGCGCCCGCACGTCCTCCAGAATACTGCGTCCGATCTCGTCACCTAGGAAGTTGTCGACCACACAGATGCCGTGCTTGTTCATGCAGGGCACGATATAGTCCGTGGCCAGTTTCTGAGGAGGCGACCGCGTCTGTCCGTTGGGTTTCGAGCTGTCAGCGGTCGGTTTGGTGTCAGGGCCCGTAGCGGACTTGATAAAATCTGGCATTCTTTCGCCGGGTGACGTAACAGAAGAGTTACTCTGAGAAGTGTTCGACTGTTCTGAAGTGTTGCACTGTACGGCGCTGCGCTCTTCAGCCGGCTGCTGCTGCTGCTGCTGCTTGTCGGCCTCCTTGCACACCCGCTTGTGCTTCTTCCAGTCCTGTCTCTGGTGCTCTTTGCTGCAGTAGAACGAGCTGCGACACCGTCCGCACTTCATCAGGTTCTCCATTTTCCCGCACAGCTCGCAGTACTGGCGCTCTCGCTCCAGACGGTCGCTTTCCCTTGAGTTTCCTTCCATGTTTCAGCGCTGTATTACAGTATCAGCCTGCAACTTCACTACATGTATCCACAAGCGAAATTGAAAGAAACGCTGTAACCTGGCCCCCCGCTGCCGATTTCATTCCATTTGACCGAGGGCAACGTGACTCTCTCACATTCCCGCGACATCTATGGTTTGACACTTGTGAAGTCTCAGCGCGAGCCGTGAGTTTGATGGAAGCGCATGGCGCCGGCTGTTCCTTTTCTTCA
>TU498395
TCTTTATTCAGGTAATATATGCATGTGACACATCTCCCATCTCCGTTAGGGTTATCCACATGCCGTACATATCCTGTCCCGTCACCAGGGTAACACGCCACCATTGCTTTTGTTCTTCCATTGATCCTGTAGTTGCCCAGTTTCCCGTTACAGTGTCGGATCAGATCGTCCATGCGACTCATGAGAAACGCTATCCTTTCGCATCCCGGCTCCTTTCCCTCCACCCAGGTGATCTTATCCCCCCGAATGTCCTTAGACGAGTCGCTCCTCTGACTGACCAGCTGTCCGTCTGTAAAGCCGCCGGTCAAGTAAAGCGCCCGCACGTCCTCCAGAATACTGCGTCCGATCTCGTCACCTAGGAAGTTGTCGACCACACAGATGCCGTGCTTGTTCATGCAGGGCACGATATAGTCCGTGGCCAGTTTCTGAGGAGGCGACCGCGTCTGTCCGTTGGGTTTCGAGCTGTCAGCGGTCGGTTTGGTGTCAGGGCCCGTAGCGGACTTGATAAAATCTGGCATTCTTTCGCCGGGTGACGTAACAGAAGAGTTACTCTGAGAAGTGTTCGACTGTTCTGAAGTGTTGCACTGTACGGCGCTGCGCTCTTCAGCCGGCTGCTGCTGCTGCTGCTGCTTGTCGGCCTCCTTGCACACCCGCTTGTGCTTCTTCCAGTCCTGTCTCTGGTGCTCTTTGCTGCAGTAGAACGAGCTGCGACACCGTCCGCACTTCATCAGGTTCTCCATTTTCCCGCACAGCTCGCAGTACTGGCGCTCTCGCTCCAGACGGTCGCTTTCCCTTGAGTTTCCTTCCATGTTTCAGCGCTGTATTACAGTATCAGCCTGCAACTTCACTACATGTATCCACAAGCGAAATTGAAAGAAACGCTGTAACCTGGCCCCCCGCTGCCGATTTCATTCCATTTGACCGAGGGCAACGTGACTCTCTCACATTCCCGCGACATCTATGGTTTGACACTTGTGAAGTCTCAGCGCGAGCCGTGAGTTTGATGGAAGCGCATGGCGCCGGCTGTTCCTTTTCTTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU498394 False 1339 lncRNA 0.49 2 6437406 6441453
TU498395 True 1039 TUCP 0.54 2 6437406 6452251

Neighbor

gene id symbol gene type direction distance location
CI01000306_06414819_06416263 NA coding downstream 20724 6414541 ~ 6416682 (-)
CI01000306_06336883_06339725 NA coding downstream 97428 6336651 ~ 6341662 (-)
CI01000306_06289571_06299875 MAN2B1 coding downstream 137155 6289148 ~ 6300251 (-)
CI01000306_06273326_06277287 NACC1 coding downstream 159964 6272415 ~ 6277442 (-)
CI01000306_06253870_06254391 NA coding downstream 181340 6253346 ~ 6256066 (-)
CI01000306_06741870_06743844 NA coding upstream 300406 6741859 ~ 6743942 (-)
CI01000306_06776313_06778496 NA coding upstream 334661 6776114 ~ 6778815 (-)
CI01000306_06780961_06789374 NA coding upstream 339320 6780773 ~ 6789594 (-)
CI01000306_06815523_06829337 NA coding upstream 373988 6815441 ~ 6829516 (-)
CI01000306_06998286_07073243 PCDH17 coding upstream 556833 6998286 ~ 7073243 (-)
G434079 NA non-coding downstream 11450 6425710 ~ 6425956 (-)
G434073 NA non-coding downstream 23232 6413753 ~ 6414174 (-)
G434064 NA non-coding downstream 30639 6406525 ~ 6406767 (-)
G434001 NA non-coding downstream 180059 6257005 ~ 6257347 (-)
G434097 NA non-coding upstream 25003 6466456 ~ 6466941 (-)
G434098 NA non-coding upstream 26252 6467705 ~ 6474533 (-)
G434273 NA non-coding upstream 341216 6782669 ~ 6782951 (-)
G434325 NA non-coding upstream 408025 6849478 ~ 6850138 (-)
G434016 NA other downstream 75763 6355180 ~ 6361643 (-)
G433985 NA other downstream 240196 6196107 ~ 6197210 (-)
G433670 NA other downstream 396123 6041014 ~ 6041283 (-)
G433450 NA other downstream 1053643 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1892314 4542723 ~ 4545244 (-)
G434338 NA other upstream 425203 6866656 ~ 6866936 (-)
G436446 NA other upstream 3214826 9656279 ~ 9671776 (-)
G436626 NA other upstream 3393572 9835025 ~ 9836323 (-)
G436643 NA other upstream 3580695 10022148 ~ 10025375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location