G433913


Basic Information

Item Value
gene id G433913
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 6817368 ~ 6817870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU498204
TCCTCAATGCAGCAGATGGCCACGCTCTCCAGGGTAAATGCTCGACACACCGGTGGGGTCCTCAGAAGAATGGCTGACCAGAGGAACAGCGCCATAGCAATTAAACAGAGGGATTCACACTTGTCTGGTTCTGAACTTACTTCCAATCTGGGTTTTGGACACAAGTCAAAGATAACAGCTGTACACGTTGAGGGATCAGTGAACCCAGCTGACTCCCTGGCAGCCGGAACACCGGCAGGAACCAGCTCATAATTAGAAACGTTTTGGGTCATCTCGAGGAGAAACAGAGAGAAGAGAGACATGCAGGGAGAATAAGAAGCAAGTATGGATATAATAATAGATGCTCAGCCTCATAGCATGTCCTATTTGTGAAATTGGTGCCAATGTCAACAAAGATCAACTTTACAGTCGGAAACATAGTATACACATATGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU498204 True 434 lncRNA 0.46 2 6817368 6817870

Neighbor

gene id symbol gene type direction distance location
CI01000306_06722271_06723631 NA coding upstream 93460 6722271 ~ 6723908 (+)
CI01000306_06592383_06685440 DIAPH3 coding upstream 131928 6592383 ~ 6685440 (+)
CI01000306_06564978_06573507 NA coding upstream 243577 6564978 ~ 6573791 (+)
CI01000306_06523680_06551842 NA coding upstream 265279 6523090 ~ 6552089 (+)
CI01000306_06479829_06485192 NA coding upstream 332176 6479829 ~ 6485192 (+)
CI01000306_07386318_07389827 NKPD1 coding downstream 568448 7386318 ~ 7390040 (+)
CI01000306_07492176_07535995 CNTNAP5L coding downstream 672423 7490293 ~ 7536956 (+)
CI01000306_07559884_07560060 NA coding downstream 742014 7559884 ~ 7560100 (+)
CI01000306_07609108_07637728 NA coding downstream 791238 7609108 ~ 7637836 (+)
CI01000306_07640049_07676915 SPOPLB, SPOPL, SPOPLA coding downstream 822179 7640049 ~ 7677784 (+)
G433915 NA non-coding upstream 34010 6783085 ~ 6783358 (+)
G433796 NA non-coding upstream 218806 6597965 ~ 6598562 (+)
G433710 NA non-coding upstream 326537 6490449 ~ 6490831 (+)
G433706 NA non-coding upstream 355324 6461206 ~ 6462044 (+)
G433765 NA non-coding upstream 387224 6429944 ~ 6430144 (+)
G434318 NA non-coding downstream 19869 6837739 ~ 6838047 (+)
G434321 NA non-coding downstream 23623 6841493 ~ 6841697 (+)
G434399 NA non-coding downstream 174091 6991961 ~ 6992267 (+)
G434400 NA non-coding downstream 176440 6994310 ~ 6994537 (+)
G434437 NA non-coding downstream 243210 7061080 ~ 7062538 (+)
G433724 NA other upstream 687590 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 709193 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 831080 5975822 ~ 5986288 (+)
G432958 NA other upstream 1157199 5658928 ~ 5660169 (+)
G432678 NA other upstream 2294832 4522182 ~ 4522536 (+)
G434545 NA other downstream 301447 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 2407695 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 2456029 9263589 ~ 9289035 (+)
G435590 NA other downstream 2894979 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 3042343 9860480 ~ 9865724 (+)

Expression


Co-expression Network