Gene
RNA
| Item | Value |
|---|---|
| gene id | G434343 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 6869809 ~ 6870026 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU498682 | True | 218 | lncRNA | 0.35 | 1 | 6869809 | 6870026 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_06815523_06829337 | NA | coding | downstream | 40293 | 6815441 ~ 6829516 (-) |
| CI01000306_06780961_06789374 | NA | coding | downstream | 80215 | 6780773 ~ 6789594 (-) |
| CI01000306_06776313_06778496 | NA | coding | downstream | 91113 | 6776114 ~ 6778815 (-) |
| CI01000306_06741870_06743844 | NA | coding | downstream | 125867 | 6741859 ~ 6743942 (-) |
| CI01000306_06414819_06416263 | NA | coding | downstream | 453127 | 6414541 ~ 6416682 (-) |
| CI01000306_06998286_07073243 | PCDH17 | coding | upstream | 128260 | 6998286 ~ 7073243 (-) |
| CI01000306_07331303_07340271 | NA | coding | upstream | 460926 | 7330952 ~ 7341271 (-) |
| CI01000306_07561305_07566290 | LIMS1 | coding | upstream | 690525 | 7560551 ~ 7566933 (-) |
| CI01000306_07680537_07684881 | NXPH2B | coding | upstream | 809842 | 7679868 ~ 7685987 (-) |
| CI01000306_07687805_07693178 | NA | coding | upstream | 817580 | 7687606 ~ 7693178 (-) |
| G434325 | NA | non-coding | downstream | 19671 | 6849478 ~ 6850138 (-) |
| G434273 | NA | non-coding | downstream | 86858 | 6782669 ~ 6782951 (-) |
| G434098 | NA | non-coding | downstream | 395276 | 6467705 ~ 6474533 (-) |
| G434097 | NA | non-coding | downstream | 402868 | 6466456 ~ 6466941 (-) |
| G434485 | NA | non-coding | upstream | 95736 | 6965762 ~ 6965987 (-) |
| G434487 | NA | non-coding | upstream | 98419 | 6968445 ~ 6968662 (-) |
| G434506 | NA | non-coding | upstream | 210098 | 7080124 ~ 7080333 (-) |
| G434517 | NA | non-coding | upstream | 223057 | 7093083 ~ 7093304 (-) |
| G434519 | NA | non-coding | upstream | 223642 | 7093668 ~ 7093948 (-) |
| G434338 | NA | other | downstream | 2873 | 6866656 ~ 6866936 (-) |
| G434086 | NA | other | downstream | 417558 | 6437406 ~ 6452251 (-) |
| G434016 | NA | other | downstream | 508166 | 6355180 ~ 6361643 (-) |
| G433985 | NA | other | downstream | 672599 | 6196107 ~ 6197210 (-) |
| G433670 | NA | other | downstream | 828526 | 6041014 ~ 6041283 (-) |
| G436446 | NA | other | upstream | 2786253 | 9656279 ~ 9671776 (-) |
| G436626 | NA | other | upstream | 2964999 | 9835025 ~ 9836323 (-) |
| G436643 | NA | other | upstream | 3152122 | 10022148 ~ 10025375 (-) |
