XLOC_012823 (ctsh)


Basic Information

Item Value
gene id XLOC_012823
gene name ctsh
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26422124 ~ 26428525 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025585
GAAAGAAGGAGGAGTTGGGGCTCATGTGAGCACATCTCGCTACTGTACCGGTGTTATTGTTCACAGGACAGGAGAGAAGATGAACAGGCTGATTTTAGCGGTCCTGTTCGCGGTTCTCTATCAGGTACTTGCAGTTCCGTTGTACACCGAGGAAGATGAGTATCATTTCAAATCATGGATGTCTCAGtacaataaaaaatatgagATAAATGAATTTTACCAGCGGCTGCAGATATTCCTGGAGAACAAGAAGAGGATTGACCAACATAATGAAGGAAACCACAAGTTTTCAATGGGACTGAACCAGTTTTCAGACATGACCTTTGCTGAATTTAAAAAGACTTACCTCCTGACGGAACCCCAGAACTGTTCAGCCACTAGAGGGAATCATGTGAGCAGTAATGGGCTTTACCCTGATGCTATCGACTGGAGAACCAAGGGACACTACATTACTGATGTCAAGAATCAGGGACCCTGCGGGAGCTGCTGGACTTTTTCCACCACAGGCTGTCTGGAGTCTGTCACTGCTATCGCCACAGGGAAACTCCTGCAACTAGCAGAGCAGCAGCTTATAGATTGTGCAGGTGATTTCGACAATCATGGTTGCAACGGAGGACTCCCGAGTCATGCCTTTGAGTATATCATGTACAACAAAGGTCTTATGACAGAAGATGATTATCCCTACCAGGCTAAAGGGGGTCAATGTAGATTCAAACCACAATTGGCTGCAGCTTTTGTGAAGGAAGTTGTAAACATCACAAAGTATGATGAAATGAGCATGGTGGATGCAGTTGCCAGGTTGAACCCTGTCAGCTTCGCATATGAGGTGACATCTGATTTCATGCACTACAAGGATGGAATTTATACCAGCACTGAGTGTCACAACACTACTGACATGGTAAACCATGCTGTGCTCGCTGTGGGTTATGCTGAGGAGAATGGAACGCCATACTGGATCGTGAAGAACTCCTGGGGAACCAACTGGGGGATTAAAGGATATTTCTACATTGAAAGAGGAAAGAACATGTGTGGACTTGCTGCGTGTTCATCCTATCCTATACCTTTGGTGTAAACAAAAGAAACGCATGAAAAGGGagactttttgtttttacatatttctaCTCTCACACAAAATCATTTTATGCACAATAGTGTCAGTGATGAGCCATTATAGTCAATACTAGTTTTCATGAAATCAgataaacacttattttatttttatatgtgcaTTGATTTAAAACATACAGTAACGCACACTCGATTAGCCTCCAATGTAGTCACTGTTGAAGGAGTTTACTTTGTTAACATTCAGATTTTGTGTTTTTGATGTTTGCATCAAAAAGTATTgtactgaaataaatattttctcaggGA
>TCONS_00025586
CAACCTTTTAATCTTGTCACATGCTTTTTAGAGGACTCCCGAGTCATGCCTTTGAGTATATCATGTACAACAAAGGTCTTATGACAGAAGATGATTATCCCTACCAGGCTAAAGGGGGTCAATGTAGATTCAAACCACAATTGGCTGCAGCTTTTGTGAAGGAAGTTGTAAACATCACAAAGTATGATGAAATGAGCATGGTGGATGCAGTTGCCAGGTTGAACCCTGTCAGCTTCGCATATGAGGTGACATCTGATTTCATGCACTACAAGGATGGAATTTATACCAGCACTGAGTGTCACAACACTACTGACATGGTAAACCATGCTGTGCTCGCTGTGGGTTATGCTGAGGAGAATGGAACGCCATACTGGATCGTGAAGAACTCCTGGGGAACCAACTGGGGGATTAAAGGgtctgtttaaattttttttaaatatcgtgCTATGCTATAAGGTAAGAATGGTTGGTTTTAAAGGTGCtgcatgtaagtttttgactcttttaaagcataaatttaccataatgtttgcagatatttaa

Function

symbol description
ctsh Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Orthologous to human CTSH (cathepsin H).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04142 Lysosome
ko04210 Apoptosis
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-030131-3539 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Orthologous to human CTSH (cathepsin H).

Ensembl:

ensembl_id ENSDARG00000041108

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025585 False 1374 mRNA 0.42 12 26422124 26428525
TCONS_00025586 True 543 processed_transcript 0.40 4 26425139 26426637

Neighbor

gene id symbol gene type direction distance location
XLOC_012822 RASGRF1 coding upstream 3487 26337869 ~ 26418637 (+)
XLOC_012821 znf710a coding upstream 327446 26048128 ~ 26094678 (+)
XLOC_012820 si:ch211-39k3.2 coding upstream 667206 25752592 ~ 25754918 (+)
XLOC_012819 fkbp16 coding upstream 676488 25653599 ~ 25745636 (+)
XLOC_012818 pex11a coding upstream 871164 25546227 ~ 25550960 (+)
XLOC_012824 blm coding downstream 304 26428829 ~ 26453729 (+)
XLOC_012825 NA coding downstream 28156 26456681 ~ 26461427 (+)
XLOC_012826 alpk3a coding downstream 291262 26719787 ~ 26728626 (+)
XLOC_012827 alpk3a coding downstream 315224 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding downstream 319286 26747811 ~ 26747927 (+)
XLOC_012816 NA non-coding upstream 922516 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 925513 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 1681403 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 1779022 24642987 ~ 24643102 (+)
XLOC_012809 CR847971.1 non-coding upstream 1938839 24477526 ~ 24483285 (+)
XLOC_012832 NA non-coding downstream 569051 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 767685 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 1308199 27736724 ~ 27736840 (+)

Expression


Co-expression Network