G434531


Basic Information

Item Value
gene id G434531
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 7108332 ~ 7108721 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU498878
TAGAATTCAGAAACTGTGTTATTAGCAATAACAAAAATATAAGCTGTTTAAACATTGGCAATAAATAAGTGATTAATGCATGCAAATTATTACATATAGCCCCTTTTTAGGGCAGTCATGGATAGAGAGTCGGACTTGTAACCTAAAGGTCATGGGTTCGAGTCTCAGGTCCGGCAGGGATTGTCGGTGAGGGGAGTGAATGTCCAGCGCTCTCTCCACCCTCAATACCACGACTGAGGTGAGACCCTTGAGCAAGGCACCGTACCCCCAACTGCTCCCCGGGCGCCGCAGCATTGGCTGCCCACTGCTCCGGGTGTGTGTTCACGGTGTGTGTGTGTGTGTGTGTTCACTGCTGTGTGTGTGCACTTGGATGGGTTAAATGCAGAGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU498878 True 390 lncRNA 0.49 1 7108332 7108721

Neighbor

gene id symbol gene type direction distance location
CI01000306_06722271_06723631 NA coding upstream 384424 6722271 ~ 6723908 (+)
CI01000306_06592383_06685440 DIAPH3 coding upstream 422892 6592383 ~ 6685440 (+)
CI01000306_06564978_06573507 NA coding upstream 534541 6564978 ~ 6573791 (+)
CI01000306_06523680_06551842 NA coding upstream 556243 6523090 ~ 6552089 (+)
CI01000306_06479829_06485192 NA coding upstream 623140 6479829 ~ 6485192 (+)
CI01000306_07386318_07389827 NKPD1 coding downstream 277597 7386318 ~ 7390040 (+)
CI01000306_07492176_07535995 CNTNAP5L coding downstream 381572 7490293 ~ 7536956 (+)
CI01000306_07559884_07560060 NA coding downstream 451163 7559884 ~ 7560100 (+)
CI01000306_07609108_07637728 NA coding downstream 500387 7609108 ~ 7637836 (+)
CI01000306_07640049_07676915 SPOPLB, SPOPL, SPOPLA coding downstream 531328 7640049 ~ 7677784 (+)
G434518 NA non-coding upstream 14405 7093709 ~ 7093927 (+)
G434437 NA non-coding upstream 45794 7061080 ~ 7062538 (+)
G434400 NA non-coding upstream 113795 6994310 ~ 6994537 (+)
G434399 NA non-coding upstream 116065 6991961 ~ 6992267 (+)
G434321 NA non-coding upstream 266635 6841493 ~ 6841697 (+)
G434596 NA non-coding downstream 77642 7186363 ~ 7186833 (+)
G434629 NA non-coding downstream 108529 7217250 ~ 7217472 (+)
G434643 NA non-coding downstream 130154 7238875 ~ 7239139 (+)
G434645 NA non-coding downstream 134964 7243685 ~ 7244333 (+)
G434647 NA non-coding downstream 137579 7246300 ~ 7246584 (+)
G433724 NA other upstream 978554 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 1000157 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 1122044 5975822 ~ 5986288 (+)
G432958 NA other upstream 1448163 5658928 ~ 5660169 (+)
G432678 NA other upstream 2585796 4522182 ~ 4522536 (+)
G434545 NA other downstream 10596 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 2116844 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 2165178 9263589 ~ 9289035 (+)
G435590 NA other downstream 2604128 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 2751492 9860480 ~ 9865724 (+)

Expression


Co-expression Network