XLOC_012826 (alpk3a)


Basic Information

Item Value
gene id XLOC_012826
gene name alpk3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26719787 ~ 26728626 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025592
CAAAGAACAGGCAAAGAAGCACACTCATGTATAGCTCTCCGATTGGTTACCAAGTGGAACTCTACAATTTGTTTCCGAAAGCCTGGAGACAAAAGTTGATTTTATTCTACAGAAAATCCCACTTTAAGAGACTGGTGGGTTTTTTTGGACTGTTGAAGTTGTTTTGTTTCGGACAATGACATCCAGGAGGCCCATGACCCGCTCTTACTCTGGAAATGGGAGATCGGGAAACCAAAATGGGGAGGATGTCCCATCGCCAAGCGGAAGGTCAGAGAGCCGAAACTACCTCTCCAATGTTAGGCCTGAAAACAGGTATTCAAACTACAGGCCGTCGAGGAGTACCTTATGTACCGTCATGGCTCAGTTGACTGAAGAGACCCAGCCATGTTTTGAGACGACAATTAAATCGAAGGCAGTGTCAGAATCCTGCAATGTTAAATTCTCTTGTGTAGTCACAGGTTACCCGTGCCCTGAGCTGACCTGGTACAAAGATGACATGGAGTTAGATCGATATTGTGGTCTTCCCAAATATGAAATATTTCGCAATGGAAAAACTCACACACTCCACATCTACAACTGTACAGAAGAAGATGCTGCAATTTATCAGGCCTCAGCAAGAAACAGTAAAGGAATCGTCTCCTGTTCCGGGGTGCTCGAGGTGGGGACCATGAGCGAGTACTTGATCCACCAAAGGTTCTTCGCCAAACTTAAGCAGAAAGCTGAAAACAAGCGGCGAGAGATGGAAGAGAGTCGACGTCGTGGTAAGGAGAACATTCAGAAAGAACAACTAAACATTATTAACCAGGAGCGCTTGCTAAGGAAGCGTAGGACTCCTGCCGAGAATGAACAGTCAAGCTCCTCTCCTACAACCCGGGACGAAGAGGAGAACGTGACATCCCAAGGGGTTGAAGAAGAACAGCCTGCAGTCAATGATAAAAATATCACACAACAGGCATCTGTAGGAACTACAGAGAAAACAGAGAATGGGGTTGAGAAACTCAACCACATCTGTGATCCAACGGAGTTGGCTGCTGCAAAGCAGTCTGCCAAAGAGAAACCGGGTGAAAAAAAGATGCGGATTACCAATGGATTTGATGAGGTGGGGATTGTTAGCCCCACCCAGAGCAACATACAACAAGAGGATGGTTATGAAGGAATTAGCTTGGCAAAATACTTAACAGAGTCTGTGCAGTCACCAGCTAGTGAGGAACATCACAGTCCTGCACTCATGGAAATTGATGTTGGTCCTATCAAAGACAAAGAACAAGAGCGAGAGCTTGAGAAAGAAAGGGAACGATTAAAAGAAGAGGAGAGGGAACGATCCAGAGaaacaaagaaagagagagagcgagagaaagtcAGGCAAACTGAACAAGAACAAAAAGCATCTGCATCTACTTCTATAACCAAAGCAGCCTCAAACAAAGACCAAGAACCTCCACACAAGTCGGCTTTAACCTCGGTTTTTCACTCCTTAAAGGACATATTCTTTGGTAAAAGCAAGAAGTCCACAGAGTCATCTGAGTCTACAAGCAGAAGCAGCATTGATAAAGAAATTCCACATGGCAAACACCTTATTTCTTCAAAAACACCTTCTCAAGAGTCTTTAGTTCACAGTTTGGCCTCCAAACAAGAGGCATCAAAATTAATTGAAGAATCTTCTCAAATTAAGAACTTGGAAGTTAAAACAAATAGTTCGGACTACATAAAAAATGCACCAAAGTCAGTTGAGGAATCCTCCCAAATGGTAACCTTGGAAGTAAAATCAAATAGTTTGGCCGTGAAGCAAAATTCACCAAGTTTGGTTGAAGAATCCTTTCAAACAGCAGACCTGGAAGTAAAAACAAATTCTTTACCTCAAATGCAAGACTCAGCCATCCCCAATGATATCATAAACTCCAAACCACCTGAGCATATTACTGAATTATCATTAAACACACCTGAGGCTGGGTCTTCCACCCCTGAAAAACATCCTGAGAACACTGAGGCAACACTTAGACTTTCTGTAGAGCAGAAGGAAATGCCTAAGGAGGACATTAGTCCAGAGGAAGTTGTGCAGATTTCACATTCGTCGCTTTTCAAG

Function

symbol description
alpk3a Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007416 synapse assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045202 synapse cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-48 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

Ensembl:

ensembl_id ENSDARG00000078989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025592 True 2083 mRNA 0.43 6 26719787 26728626

Neighbor

gene id symbol gene type direction distance location
XLOC_012825 NA coding upstream 258360 26456681 ~ 26461427 (+)
XLOC_012824 blm coding upstream 266058 26428829 ~ 26453729 (+)
XLOC_012823 ctsh coding upstream 291262 26422124 ~ 26428525 (+)
XLOC_012822 RASGRF1 coding upstream 301150 26337869 ~ 26418637 (+)
XLOC_012821 znf710a coding upstream 625109 26048128 ~ 26094678 (+)
XLOC_012827 alpk3a coding downstream 15123 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding downstream 19185 26747811 ~ 26747927 (+)
XLOC_012829 slc28a1 coding downstream 100460 26829086 ~ 26850069 (+)
XLOC_012830 ch25hl1.2 coding downstream 167368 26895994 ~ 26896826 (+)
XLOC_012831 tspan3a coding downstream 170690 26899316 ~ 26920132 (+)
XLOC_012816 NA non-coding upstream 1220179 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 1223176 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 1979066 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 2076685 24642987 ~ 24643102 (+)
XLOC_012832 NA non-coding downstream 268950 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 467584 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 1008098 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1575265 28303891 ~ 28304317 (+)

Expression


Co-expression Network