XLOC_012827 (alpk3a)


Basic Information

Item Value
gene id XLOC_012827
gene name alpk3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26743749 ~ 26755230 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025593
CTCCTCAGGTTATCCGTAAGATTAGGGGAGAGCCCTTCTCAGATGCCTCAGGCCACTTGAAGCTGTGGTGCCAGTTTTTTAACATTCTTAGTGACTCCACTATCAAGTGGTACAGAGATGAAGAGGAAATTGTGGAGCTGGAAAGACGtgCCGGAGACGAGGGGCCAGTAGCACTGGCCATAGTCCAGGCTTCCAGCAGAGACTGTGGAGTGTATGGCTGCTCAATCAAAAATGAATATGGGACTGACATCACTGATTACTTACTCAGCGCTGACATACTGGCAGAATTTTTCTTGAGGGAGGATTTAGAAGTTGGAGAAGAGATTGAGATGACACCAATGATGTTCACCAAAGGCCTGGCAGACTCGGGTTACTGGGGAGAAAAATTCTTTGGTCGTATCATGACAGAAGAGGTACAGATCGGAGAAGGATGTCTACACAAGACCTGCAGGGCAAAGGTCATCTACGGTTTGGACCCCATCTTTGAGTCGGGCAGCACATGCATCACTAAAGTCAGAAATCCCATCGCATACGGAGCCAAAGAGGAGAGCAACCTGACTGAGAGAAGTCTAGAGATCACCAAACAGaaTTGTAAAATCCAGAATACCATTCGGGAGTACTGCAAAATATTTGCAGCTGAGGCAAGAGTGATCGAGAACTTTGGATTCTCACTGGAGGTGATTCCCCTTCATTTGATGTACCGGCCCGCCAATACAATTCCATATGCATCAGTAGAGAGTGACCTGAAGGGTGTGTATGTGAAATACAGTCTGATGGACAACGCCGGAAGACTGATTGCCAAAACAGCCTCTGAGGTGGAGCAGAAGTGTTGCACTTTCCAACACTGGATTCATCAGTGGACCAATGGAAACCTGCTGGTTACCCGTGTTTCAGGTGTCGATACAAAGATTACAAGCATTGAAATCGCCACTAAGTCTAAAGGGTATCAAGGCCTCACTGATAAAGGATCTCCCAAAATCATCGATCAGTTCATTGCTCAACATCAGTGCAACTACTACTGTGGACTGCTGGGCCTTAGACCCTTAAAGCCGATAGATTCTCTCCAGCAGCCTAAAATCAAAACCTCCAGGAGCCCTCTACTGGCCCGAAGAGGAGTTACAGGCTCATCCAGCCCTCAGCTGCAGAAGAAAGGAACCAGCCCACAATCCACCAGAAAAGGCACGTCAAGCCCCAAAGTGGCTAAAAAGACTGGTGAAACTGGGGAGAACAATTCTACTAGCAAGCATAAAACAGTAGAGGTCCCAAAAACTGTCAGGATGAGGTAGAGagaaacaaaatgcaaaacaaggACATACTTTTGTTGATGTGTTAACCAAACTTTAGTTTGGAGTCTGTATAATTATCGAGAGCTACTGTAAATGGACTGTAAATGGATTCTGTCCATTGTCTTTGCACAAAATGAGACAACAAACGCAGAATTATTATAGAAATGAGTCACAAGAaatgtacaaaagctgtcactggacAGGTGCCTTCTCAAAAGGCACACTTTTGTTCTTATTAGGaggtattaattaatatatacacTAATTTGTACTTCTAGGtaaccaatatggaccctttaggtacaacaGTGTAGCGTTTGAAAGTGAAGGCTTTTGTGCTTCTGTGAGTGTGTAAACAGCAGTGTTGGggcaagttacttttaaagtggATATATGGAAATATTGTGTTAAATAAAGTAACTAAATGTTATACTTTGTTACTTTTAAGGAAAGTTATGTTACTTTTATCATCTGGGTTAGACTTGCCTgtttgtaataatataaaaaactcaTAAGTGTAGGTGAAATAAAGGTGAATAAACCTCAGGCtgatgaaaatgtaaattttacagtGTAAGCACAGCTCAGACAAGCCTTTCAGTTGTGCTGTCTTTGTGCAGAGTCGCTATTCAGTTTGCTTTTCATAGCTTCTAATTGATTTAAGGGATACT
>TCONS_00025595
GGTGATTCCCCTTCATTTGATGTACCGGCCCGCCAATACAATTCCATATGCATCAGTAGAGAGTGACCTGAAGGGTGTGTATGTGAAATACAGTCTGATGGACAACGCCGGAAGACTGATTGCCAAAACAGCCTCTGAGGTGGAGCAGAAGTGTTGCACTTTCCAACACTGGATTCATCAGTGGACCAATGGAAACCTGCTGGTTACCCGGTTAGAAGGTGTCGATACAAAGATTACAAGCATTGAAATCGCCACTAAGTCTAAAGGGTATCAAGGCCTCACTGATAAAGGATCTCCCAAAATCATCGATCAGTTCATTGCTCAACATCAGTGCAACTACTACTGTGGACTGCTGGGCCTTAGACCCTTAAAGCCGATAGATTCTCTCCAGCAGCCTAAAATCAAAACCTCCAGGAGCCCTCTACTGGCCCGAAGAGGAGTTACAGGCTCATCCAGCCCTCAGCTGCAGAAGAAAGGAACCAGCCCACAATCCACCAGAAAAGGCACGTCAAGCCCCAAAGTGGCTAAAAAGACTGGTGAAACTGGGGAGAACAATTCTACTAGCAAGCATAAAACAGTAGAGGTCCCAAAAACTGTCAGGATGAGGTAGAGagaaacaaaatgcaaaacaaggACATACTTTTGTTGATGTGTTAACCAAACTTTAGTTTGGAGTCTGTATAATTATCGAGAGCTACTGTAAATGGACTGTAAATGGATTCTGTCCATTGTCTTTGCACAAAATGAGACAACAAACGCAGAATTATTATAGAAATGAGTCACAAGAaatgtacaaaagctgtcactggacAGGTGCCTTCTCAAAAGGCACACTTTTGTTCTTATTAGGaggtattaattaatatatacacTAATTTGTACTTCTAGGtaaccaatatggaccctttaggtacaacaGTGTAGCGTTTGAAAGTGAAGGCTTTTGTGCTTCTGTGAGTGTGTAAACAGCAGTGTTGGggcaagttacttttaaagtggATATATGGAAATATTGTGTTAAATAAAGTAACTAAATGTTATACTTTGTTACTTTTAAGGAAAGTTATGTTACTTTTATCATCTGGGTTAGACTTGCCTgtttgtaataatataaaaaactcaTAAGTGTAGGTGAAATAAAGGTGAATAAACCTCAGGCtgatgaaaatgtaaattttacagtGTAAGCACAGCTCAGACAAGCCTTTCAGTTGTGCTGTCTTTGTGCAGAGTCGCTATTCAGTTTGCTTTTCATAGCTTCTAATTGATTTAAGGGATACTGAATCTGTTTTTGTACCAGTGAGACAAATAAACAATTTCACATTTAAGCTAGAACAAGCTGCGGTAAGCATCAAGTTTACACATCGCACACAACACATCTCTTGATTTCTGTCAACTTGGTAAGAGCAGTCAGTCATGAAATGAGAAACAAAGTATTTGGGattacttttttgaaaaaaaatactttcttGAAAATGAGAAAGTAATGCTTTACTAGTTACTTGAAAAAGTATTTGATTATGTAACTCATGTTACTTGTAATGTGTAAGCCCCAACACTGGTAAAGAAGTGAATGACTAGAGGTGTTCAgactaatttattattaatgtgaaCTGCTTTGCAGCTTTAAGTCAATTAATATCTTCTAAGAACACTTTTCTTTAGATAAGAACTGAATACATGCTACATCCCCTTTTAAGACTATAACTGGAGATAAATATAAAGCAGGACTCCCTGTCGAACAATGTTCTCAGATAGACTCTGAAACTTTGTTAGGGCTTATTCAAATGTTCCTCTGTCAAGTGTCTGTGGTGGAGGAACCATAAGAGAGAGAGACTCTTTTAAGGATTTGTCAAACATCTGTGATGTGATGTATCTGTTGCAGCTGTGTAGAAATGCAGCCTTTTTTGTAGCTTCACTGAGATGCTTTTTATAGTAGATTGTTCTGCTTTTAAGGGTACGGCCATAAATCTGCATCACCAGCACTCCAATCTTGGTTGTATAAGAGCAAACTTTGAGCGTCATAATGACTGTGTCTTCGTTTTTATCTTACATGTGTCATCCAGAAGAGAGAAATTCATGAGCCTTATTATCGCAGTAAAGATATTCACTGCTGGCCTTTCAGACTGTTTATGCGTCATCACTCTCTAGAACCCTTCAGTTTCACATCAGTGCAttacatgtattttaaataataataaaaaagtaaaaaacaaagttTGCTGTACCATTTTTGCCATTGCAGCCTTTGTGGCAATAACggaattcataaataaaaaatatgtctcaaatacacacacacaactggtAATGCTCtcagtgtgtatagatgtttctattcattcattcattcattcattcaatcattcattcattcattcattttctatttggcttagtcccttaattaataaGAGGTTGCCAcggcagaatgaatcgccaactaatccagcatatgttttatgcagtggatgcccttccagctgcaaccaatcactgggaaacatctatacatactcattcacacacatacactacagacaatttctttggacgtaggggaaaccggagcacccagaggaaacccacgcgaaaatgggaagaatatgcaaacttcacaaggctcgaaccagcgaccttcttgctgtgaggcgatagtgctacccactgcaccaccgtgacacccatcaGATGTTtctaaaatagttaaaataattgtcaaaaaaaactatttagtagCTACTATTtaactatagcccctttcacacagtgatagcgGTACATATTCTGAAAATTCCAGACtttactggtaaaaaaaaaaaaacactgttcacACAGAATTGTTCCAGGAAAGATCATTCACACATCCATGAAGCATCTGATgcagagcttaaaggtaaacaaatgGCGGTTTATCATAAGAATGTTATCGATAttgttttacacagttggcattaagaaggaacattgAAACGTTAACTGactgaaaaatattcaaaggttttgttttcattaacagctaggatgtgaatgcgtctgaatgttctgattggctggagtagacgtcttaCGTCAGCGCATTTCAAACGTCAATGTGCTCTTTTAGTCAATTTTCCTTCTGAATTCACACAGAGCAGAATTCCagcaaaaaatttttttacaacttctctttccagaaaattgccttaatgaatttaccggtatttcaaaaagggcctgttcacacatgatacCTTTCCGGAAAATAATTTTCCAGGAAGGTTTTTATGTGTGAAAGAGCCTTATGTGTACATACTGTATACCAAAACCtactaagtaatgtatttcagattcgcaaaaacgtACACAGCGTcctttagtggatttgtcaaCAAAACGAGTTACGAAGCTTACACGGggcaatatattttatattccacaaaaatgtaggctgaggggTGTATATTTAATGAGACTGGGTTAAAATGTTTCATAGTTGAGTTGTTTGTCAATTCAATACTGCTGTTCAGCTGGTCAGTAAGGATAGTTTAGGGTTCCTAACACAACATAGTAAACAGATCTCAGTTGAGAGGAAGAACCAAGACAACAGCAGGTCAACCTGATGTATCATTAAAGTCAaaacacatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaatgaattacgaACGAACAAACACGAATGTAGAAGTACCAATGGATTAATAAAAGCAACTGATTAAACAAAATGAGGAGCAGAATGGTTTGACTTATTAAAAGTGCAGTAATTTCAGAGCTGTTGGTGTCAAGCATCCTGCCCATTTCTTTCCCTCATtggacattatttattttttgtaatgtatTTGTAACAGTCACCCAAgttccagcctgtgcagattgctGGTATATACACTGATCGCTAAAAAAACTACAAATCAGTTGTTACATGGACTACAGATCCTgtcatgcatcacacacacacacacacctgttatgGATCTCAtttgattacactcacacagctgggagctgttTTAAGACGGATtagttggactatttatacagcacacaaacTTCTGTCTTTTTGTACAGtattgtgaacattatgacgttttttccttgccttgtctGGTCGTGTTTTTGACCGtcaccttgtttgtttgtttacgttgcctgctgcctgcctgtactgactaTGACCTGTATATTTGACTAggactctggatttgcctacaTAGATCTATTTGCTCCAGATTGTGACCGTTgattgcctgaccatctctgtataataaaccctgc

Function

symbol description
alpk3a Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007416 synapse assembly biological_process
GO:0010842 retina layer formation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0045202 synapse cellular_component
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-48 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules; retina layer formation; and synapse assembly. Predicted to act upstream of or within protein phosphorylation. Predicted to be active in synapse. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human ALPK3 (alpha kinase 3).

Ensembl:

ensembl_id ENSDARG00000078989

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025593 False 1957 mRNA 0.43 8 26743749 26752214
TCONS_00025595 True 4297 mRNA 0.38 3 26750516 26755230

Neighbor

gene id symbol gene type direction distance location
XLOC_012826 alpk3a coding upstream 15123 26719787 ~ 26728626 (+)
XLOC_012825 NA coding upstream 282322 26456681 ~ 26461427 (+)
XLOC_012824 blm coding upstream 290020 26428829 ~ 26453729 (+)
XLOC_012823 ctsh coding upstream 315224 26422124 ~ 26428525 (+)
XLOC_012822 RASGRF1 coding upstream 325112 26337869 ~ 26418637 (+)
XLOC_012829 slc28a1 coding downstream 73856 26829086 ~ 26850069 (+)
XLOC_012830 ch25hl1.2 coding downstream 140764 26895994 ~ 26896826 (+)
XLOC_012831 tspan3a coding downstream 144086 26899316 ~ 26920132 (+)
XLOC_012832 NA coding downstream 242346 26997576 ~ 26998589 (+)
XLOC_012833 pik3c2a coding downstream 245620 27000850 ~ 27085828 (+)
XLOC_012816 NA non-coding upstream 1244141 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 1247138 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 2003028 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 non-coding upstream 2100647 24642987 ~ 24643102 (+)
XLOC_012835 BX640463.2 non-coding downstream 440980 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 981494 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1548661 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 2419863 29175093 ~ 29175208 (+)

Expression


Co-expression Network