XLOC_012829 (slc28a1)


Basic Information

Item Value
gene id XLOC_012829
gene name slc28a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26829086 ~ 26850069 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025596
ACTTGTCACAGAGAACGCAGAATGAAGGACAAAGAAGATTTGCAGTTGACGGACGTCTCGTATGGGAACGAACAAGGCGTGGATAATCCAGTCTTTGTGAAGGAGGATACATTACCAGATGACCTGAGTGACAGTGACAAAGAGTCAGAGAAGGATTCAAAGTCAGAGAAGGAGTCAAGCTCATGCATGAGCAAAGCATGTCTACCCATCACAGTCACAGAGACCTTCTTCAAGACTCACtccaaaataatcaaatatattgTGTTGGCAATCCTTGCTGCAGGTTATCTGGCGTACTTCATTTATGCCTGTTATTTAAGCTTCCAGAGGGCTCTTGCATTGGTGGTCCTCACTTGTCTGGGAGTTTTCATCCTCGTGTGCGAACTAGTGTTTCGGTACAAGGGTGACAGCATCAAGAGGTGCTTCAAGCCTGTGCAGAGATGTTTTAGATCCAATATGAAATGGATGAAATGGGTATTCATAGTAATTGTGGTTGGTCTGTTGGTGGCATGGCTGGCAGTCGACACACGAAAGCGCCCAGAGCAGCTCATCTCTTTTGGTGGCGTCTGTCTGTTCATTGTTGCAATATTTCTCTTCTCTGCACACCGAACTGCAGTGAGATGGAGCACTGTCTTCTGGGGTCTTGGTTTACAGTTTGCCATTGGTCTGTTTGTTATTAGGACAGAGCCTGGTCTCGTTGCATTCGAATGGCTCGGAAAGcaagttcagatttttctgGACTACACAAAAGCTGGTTCCGGGTTTGTGTTTGGAAACCTCATTGACAACATATTTGCATTCCAGGCTCTGCCTATAGTGGTGTTCTTCAGCAGTGTAATGTCAGTTCTGTACTACCTAGGGGTGATGCAGTGGGTCATCACAAAGATCTCCTGGGTAATGCAAGTAACAATGGGAACATCCTCCACAGAGACTCTCAGTGTAGCAGGAAACATCTTTGTTGGCCAGACAGAGGCTCCCCTTCTGATCCGTCCCTATCTAAAGGACATGACCAAATCTGAGATTCATGCAGTGATGACTGGTGGATTTGCAACCATTGCTGGAAGTGTAATGGGTGCTTTCATCTCATTCGGGATTGATGCCTCGTCTTTGATTTCTGCTTCAGTGATGGCTGCTCCATGTGCTTTAGCCATCTCCAAACTGTCCTACCCTGAAACGGAAAAGAGCAAGTTCACATCTAAAAGTCAAATTAAAGTGGACAGTGGAGGTGAGCAGAACGTGTTGGAAGCTGTTAGCGGCGGTGCGTCTGCTTCTATAGGGCTTGTGGCCAACATTGCTGCTAACCTGATTGCTTTTCTTGCCATCTTGGGCTTCATTAATGCAACTCTAAGATGGTTGGGGGGCATGGTGGGATACCCAGATGTCACCTTTGAGGTTCGGTCAGAAATCATCTGCACTTATGCCCTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGAATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACCAAAGAAGGGAGTAATTTCTTCTTTAGTGCTCAGAGCCTTGTTCACAGGCACATGTGTTTCTCTGATCAATGCCTGTATTGCTGGTATCCTTTTCGTTCCTCCCCTAGACTGTGTGGGTCTGCTTCAAAATGCAGTCTTCGAACCTACTACAGCCAACCTTGAAACTTGCTGTTATGATCTTTTTAAAAGcactgTCAACAATGGAACGGTTTCTTTTGAGGGGTCCTGGAGTGTAGTGGCAAATGCcacaatttattttgaaaactgtTGTGGCCTCTATAATGCAACTGTGTGCATGTAGTTAGGCCAAGAGGtaacatacagtataatatagCAATGCAAAACTCTCTCAACTAAATATactagtatttattaaattatcacaTTATGAAATGTTTGCTCAGTTGATAGATGtacaaaatgtatttgattttatttgctcatttattcaaaCCTAAATTCCTCGTTTATGTAGCCCATATGTGAGAGCAATTTGTGTgcaagtattttatttttcttctacaAATTCTGTTGTTTTGTCTCCTGTAAATGTTGTAATTGTTGTAAGAATTTACATCCAATTACATTCTTATCAATGGCAG
>TCONS_00025597
GAACGAACAAGGCGTGGATAATCCAGTCTTTGTGAAGGAGGATACATTACCAGATGACCTGAGTGACAGTGACAAAGAGTCAGAGAAGGATTCAAAGTCAGAGAAGGAGTCAAGCTCATGCATGAGCAAAGCATGTCTACCCATCACAGTCACAGAGACCTTCTTCAAGACTCACtccaaaataatcaaatatattgTGTTGGCAATCCTTGCTGCAGGTTATCTGGCGTACTTCATTTATGCCTGTTATTTAAGCTTCCAGAGGGCTCTTGCATTGGTGGTCCTCACTTGTCTGGGAGTTTTCATCCTCGTGTGCGAACTAGTGTTTCGGTACAAGGGTGACAGCATCAAGAGGTGCTTCAAGCCTGTGCAGAGATGTTTTAGATCCAATATGAAATGGATGAAATGGGTATTCATAGTAATTGTGGTTGGTCTGTTGGTGGCATGGCTGGCAGTCGACACACGAAAGCGCCCAGAGCAGCTCATCTCTTTTGGTGGCGTCTGTCTGTTCATTGTTGCAATATTTCTCTTCTCTGCACACCGAACTGCAGTGAGATGGAGCACTGTCTTCTGGGGTCTTGGTTTACAGTTTGCCATTGGTCTGTTTGTTATTAGGACAGAGCCTGGTCTCGTTGCATTCGAATGGCTCGGAAAGcaagttcagatttttctgGACTACACAAAAGCTGGTTCCGGGTTTGTGTTTGGAAACCTCATTGACAACATATTTGCATTCCAGGCTCTGCCTATAGTGGTGTTCTTCAGCAGTGTAATGTCAGTTCTGTACTACCTAGGGGTGATGCAGTGGGTCATCACAAAGATCTCCTGGGTAATGCAAGTAACAATGGGAACATCCTCCACAGAGACTCTCAGTGTAGCAGGAAACATCTTTGTTGGCCAGACAGAGGCTCCCCTTCTGATCCGTCCCTATCTAAAGGACATGACCAAATCTGAGATTCATGCAGTGATGACTGGTGGATTTGCAACCATTGCTGGAAGTGTAATGGGTGCTTTCATCTCATTCGGGATTGATGCCTCGTCTTTGATTTCTGCTTCAGTGATGGCTGCTCCATGTGCTTTAGCCATCTCCAAACTGTCCTACCCTGAAACGGAAAAGAGCAAGTTCACATCTAAAAGTCAAATTAAAGTGGACAGTGGAGGTGAGCAGAACGTGTTGGAAGCTGTTAGCGGCGGTGCGTCTGCTTCTATAGGGCTTGTGGCCAACATTGCTGCTAACCTGATTGCTTTTCTTGCCATCTTGGGCTTCATTAATGCAACTCTAAGATGGTTGGGGGGCATGGTGGGATACCCAGATGTCACCTTTGAGCTGATCTGCTCTTTTGTCTTCATGCCGGTGGCCTTCATGATGGGAATTCCATACGATGAGTCTTTCAAAGTGGCTGAACTCATCGGCACTAAACTCTTCCTCAATGAGTTTATAGCCTACGAGAAGCTGTCAGAGCTCAAAAACAACAGGCTTAATGGCATTTTAGATGACAACGGAGATCCAAATTGGATCTCAGTTCGGTCAGAAATCATCTGCACTTATGCCCTGTGTGGCTTTGCTAATTTCAGCTCTCTTGGAATTGTGATTGGAGGCCTGTCCTCTATTTGTCCACCAAAGAAGGGAGTAATTTCTTCTTTAGTGCTCAGAGCCTTGTTCACAGGCACATGTGTTTCTCTGATCAATGCCTGTATTGCTGACTGTGTGGGTCTGCTTCAAAATGCAGTCTTCGAACCTACTACAGCCAACCTTGAAACTTGCTGTTATGATCTTTTTAAAAGcactgTCAACAATGGAACGGTTTCTTTTGAGGGGTCCTGGAGTGTAGTGGCAAATGCcacaatttattttgaaaactgtTGTGGCCTCTATAATGCAACTGTGTGCATGTAG

Function

symbol description
slc28a1 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0015293 symporter activity molecular_function
GO:0005337 nucleoside transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-117 Predicted to enable nucleoside:sodium symporter activity. Predicted to be involved in nucleoside transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human SLC28A1 (solute carrier family 28 member 1).

Ensembl:

ensembl_id ENSDARG00000060879

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025596 False 2092 mRNA 0.43 17 26829086 26850069
TCONS_00025597 True 1897 mRNA 0.45 17 26829362 26849768

Neighbor

gene id symbol gene type direction distance location
XLOC_012827 alpk3a coding upstream 73856 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding upstream 81159 26747811 ~ 26747927 (+)
XLOC_012826 alpk3a coding upstream 100460 26719787 ~ 26728626 (+)
XLOC_012825 NA coding upstream 367659 26456681 ~ 26461427 (+)
XLOC_012824 blm coding upstream 375357 26428829 ~ 26453729 (+)
XLOC_012830 ch25hl1.2 coding downstream 45925 26895994 ~ 26896826 (+)
XLOC_012831 tspan3a coding downstream 49247 26899316 ~ 26920132 (+)
XLOC_012832 NA coding downstream 147507 26997576 ~ 26998589 (+)
XLOC_012833 pik3c2a coding downstream 150781 27000850 ~ 27085828 (+)
XLOC_012834 plekha7a coding downstream 251027 27101096 ~ 27307129 (+)
XLOC_012816 NA non-coding upstream 1329478 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 1332475 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 2088365 24737234 ~ 24740721 (+)
XLOC_012835 BX640463.2 non-coding downstream 346141 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 886655 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1453822 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 2325024 29175093 ~ 29175208 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00526975_00537006 SLC28A1 coding CI01000013 null 526975 ~ 537074 (+)