XLOC_012830 (ch25hl1.2)


Basic Information

Item Value
gene id XLOC_012830
gene name ch25hl1.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 26895994 ~ 26896826 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025598
AAATGACACTAGCACACATTTTTCAGACAATTTGGGACTTTGGGACGAAAGACTCTGTTTTGCAGCCTATTTGGGACTACGTGCGACTCAACCACTCAGAGACCCTCCGGTCTCCTCTCTTTCCAGTGGTTCTTACCGTATCGTCATATTTTGTTCTTGTCCTGCCGTACCTTTCTTGTGATATCTTGGGAAGGAAGTGGCCAGCCATTTACCGCTACAAAATCCAACCTGACAAGCTGCCAACAACTGCAATGCTCCTTCACTGCAGTGGAGTGACTCTTTATAACCACATCCTTCTGGTGATTCCAGCAGCAGTCGCACAGTGGATGTGGAGACCTCCGATTCCCCTTCCCGAACAAGCACCTACTTTACTAGAACTGGTTGGTGGAGTAACTGGAAACCTTCTTCTTTTTGACTTGCAGTATTTCATCTGGCACTTCTTGCACCATAAGATTCGCTGGCTGTATGTGACTTTCCATGCCATCCATCATAATTATTCTGCCCCCTTTGCTCTGGCCACACAGTGCCTTGGAGGATGGGAGTTGGTGACGGTGGGCTTCTGGACCACCCTCAATCCCGTCCTGCTGAGGTGTCATCTGCTCACCACCTGGATGTTCATGGTGGTCCACGTGTACGTGTCTGTGGAAGACCACTGTGGATACGATTTCCCTTGGTCCACATCTCGTCTGATCCCATTTGGTGTTTATGGAGGTCCGAGCAAGCATGATGTGCACCATCAGAAGCCTAATACTAACTTTGCACCTCATTTTAGTCACTGGGATAAAATGTTTGGCACTCATGCTGATTTTAGATTTTCTAAACCTCGGGAATGA

Function

symbol description
ch25hl1.2 Predicted to enable C-4 methylsterol oxidase activity and steroid hydroxylase activity. Predicted to be involved in cholesterol metabolic process and sterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0008202 steroid metabolic process biological_process
GO:0008203 cholesterol metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0008610 lipid biosynthetic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008395 steroid hydroxylase activity molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0000254 C-4 methylsterol oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-90 Predicted to enable C-4 methylsterol oxidase activity and steroid hydroxylase activity. Predicted to be involved in cholesterol metabolic process and sterol biosynthetic process. Predicted to act upstream of or within steroid biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

Ensembl:

ensembl_id ENSDARG00000068138

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025598 True 833 mRNA 0.48 1 26895994 26896826

Neighbor

gene id symbol gene type direction distance location
XLOC_012829 slc28a1 coding upstream 45925 26829086 ~ 26850069 (+)
XLOC_012827 alpk3a coding upstream 140764 26743749 ~ 26755230 (+)
XLOC_012828 AL935332.1 coding upstream 148067 26747811 ~ 26747927 (+)
XLOC_012826 alpk3a coding upstream 167368 26719787 ~ 26728626 (+)
XLOC_012825 NA coding upstream 434567 26456681 ~ 26461427 (+)
XLOC_012831 tspan3a coding downstream 2490 26899316 ~ 26920132 (+)
XLOC_012832 NA coding downstream 100750 26997576 ~ 26998589 (+)
XLOC_012833 pik3c2a coding downstream 104024 27000850 ~ 27085828 (+)
XLOC_012834 plekha7a coding downstream 204270 27101096 ~ 27307129 (+)
XLOC_012835 BX640463.2 coding downstream 299384 27196210 ~ 27196326 (+)
XLOC_012816 NA non-coding upstream 1396386 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding upstream 1399383 25492411 ~ 25496611 (+)
XLOC_012812 AL935295.1 non-coding upstream 2155273 24737234 ~ 24740721 (+)
XLOC_012841 BX649600.1 non-coding downstream 839898 27736724 ~ 27736840 (+)
XLOC_012845 CR769777.2 non-coding downstream 1407065 28303891 ~ 28304317 (+)
XLOC_012849 CT025546.2 non-coding downstream 2278267 29175093 ~ 29175208 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_00471569_00472390 CH25HL1.2 coding CI01000013 null 471134 ~ 472499 (-)