Gene
RNA
| Item | Value |
|---|---|
| gene id | G435922 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 7999010 ~ 8002976 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU500397 | True | 3967 | lncRNA | 0.37 | 1 | 7999010 | 8002976 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_07953852_07996146 | XXYLT1 | coding | downstream | 2742 | 7953812 ~ 7996268 (-) |
| CI01000306_07856222_07862594 | LSG1 | coding | downstream | 136416 | 7856042 ~ 7862594 (-) |
| CI01000306_07847872_07854953 | NA | coding | downstream | 144057 | 7847791 ~ 7854953 (-) |
| CI01000306_07824351_07831998 | ATP13A3 | coding | downstream | 167012 | 7824351 ~ 7831998 (-) |
| CI01000306_07820183_07821657 | ATP13A3 | coding | downstream | 177353 | 7820139 ~ 7821657 (-) |
| CI01000306_08004025_08017848 | PIK3CA | coding | upstream | 911 | 8003887 ~ 8018168 (-) |
| CI01000306_08045293_08057171 | F264, PFKFB4B, PFKFB4, PFKFB4A | coding | upstream | 41666 | 8044642 ~ 8057171 (-) |
| CI01000306_08061250_08076179 | MAPKAPK3 | coding | upstream | 58274 | 8061250 ~ 8076179 (-) |
| CI01000306_08077693_08108117 | DNAH1 | coding | upstream | 74633 | 8077609 ~ 8108117 (-) |
| CI01000306_08143309_08144833 | CHCHD4, CHCHD4A | coding | upstream | 140163 | 8143139 ~ 8146400 (-) |
| G436032 | NA | non-coding | downstream | 123392 | 7874765 ~ 7875618 (-) |
| G435967 | NA | non-coding | downstream | 455399 | 7543374 ~ 7543611 (-) |
| G435961 | NA | non-coding | downstream | 462024 | 7534947 ~ 7536986 (-) |
| G434852 | NA | non-coding | downstream | 569737 | 7428567 ~ 7429273 (-) |
| G434794 | NA | non-coding | downstream | 612630 | 7332281 ~ 7386380 (-) |
| G436076 | NA | non-coding | upstream | 152279 | 8155255 ~ 8155486 (-) |
| G436095 | NA | non-coding | upstream | 208478 | 8211454 ~ 8211949 (-) |
| G436096 | NA | non-coding | upstream | 209471 | 8212447 ~ 8212968 (-) |
| G436098 | NA | non-coding | upstream | 210278 | 8213254 ~ 8213671 (-) |
| G436097 | NA | non-coding | upstream | 210840 | 8213816 ~ 8214248 (-) |
| G434338 | NA | other | downstream | 1132074 | 6866656 ~ 6866936 (-) |
| G434086 | NA | other | downstream | 1546759 | 6437406 ~ 6452251 (-) |
| G434016 | NA | other | downstream | 1637367 | 6355180 ~ 6361643 (-) |
| G433985 | NA | other | downstream | 1801800 | 6196107 ~ 6197210 (-) |
| G433670 | NA | other | downstream | 1957727 | 6041014 ~ 6041283 (-) |
| G436446 | NA | other | upstream | 1653303 | 9656279 ~ 9671776 (-) |
| G436626 | NA | other | upstream | 1832049 | 9835025 ~ 9836323 (-) |
| G436643 | NA | other | upstream | 2019172 | 10022148 ~ 10025375 (-) |
