Gene
RNA
| Item | Value |
|---|---|
| gene id | G436099 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 8215973 ~ 8216944 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU500608 | False | 525 | lncRNA | 0.31 | 1 | 8215973 | 8216497 |
| TU500611 | False | 456 | lncRNA | 0.32 | 1 | 8215973 | 8216428 |
| TU500609 | False | 933 | lncRNA | 0.29 | 1 | 8216012 | 8216944 |
| TU500610 | True | 417 | lncRNA | 0.32 | 1 | 8216012 | 8216428 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_08208426_08210350 | NA | coding | downstream | 5603 | 8208224 ~ 8210370 (-) |
| CI01000306_08143309_08144833 | CHCHD4, CHCHD4A | coding | downstream | 69573 | 8143139 ~ 8146400 (-) |
| CI01000306_08077693_08108117 | DNAH1 | coding | downstream | 107856 | 8077609 ~ 8108117 (-) |
| CI01000306_08061250_08076179 | MAPKAPK3 | coding | downstream | 139794 | 8061250 ~ 8076179 (-) |
| CI01000306_08045293_08057171 | F264, PFKFB4B, PFKFB4, PFKFB4A | coding | downstream | 158802 | 8044642 ~ 8057171 (-) |
| CI01000306_08349295_08353547 | TRAIP | coding | upstream | 132212 | 8349156 ~ 8353547 (-) |
| CI01000306_08521837_08523740 | NA | coding | upstream | 304089 | 8521033 ~ 8523770 (-) |
| CI01000306_08533490_08558727 | SEMA3FB, SEMA3F | coding | upstream | 316484 | 8533428 ~ 8559154 (-) |
| CI01000306_08596204_08597372 | NA | coding | upstream | 378931 | 8595875 ~ 8598404 (-) |
| CI01000306_08690665_08696165 | ARL8BA, ARL8B, ARL8BB, ARL8A | coding | upstream | 473721 | 8690665 ~ 8696165 (-) |
| G436097 | NA | non-coding | downstream | 1725 | 8213816 ~ 8214248 (-) |
| G436098 | NA | non-coding | downstream | 2302 | 8213254 ~ 8213671 (-) |
| G436096 | NA | non-coding | downstream | 3005 | 8212447 ~ 8212968 (-) |
| G436095 | NA | non-coding | downstream | 4024 | 8211454 ~ 8211949 (-) |
| G436076 | NA | non-coding | downstream | 60487 | 8155255 ~ 8155486 (-) |
| G436113 | NA | non-coding | upstream | 29936 | 8246880 ~ 8250434 (-) |
| G436114 | NA | non-coding | upstream | 36032 | 8252976 ~ 8254624 (-) |
| G436116 | NA | non-coding | upstream | 38673 | 8255617 ~ 8256269 (-) |
| G436120 | NA | non-coding | upstream | 41138 | 8258082 ~ 8259440 (-) |
| G436063 | NA | non-coding | upstream | 49725 | 8266669 ~ 8287542 (-) |
| G434338 | NA | other | downstream | 1349037 | 6866656 ~ 6866936 (-) |
| G434086 | NA | other | downstream | 1763722 | 6437406 ~ 6452251 (-) |
| G434016 | NA | other | downstream | 1854330 | 6355180 ~ 6361643 (-) |
| G433985 | NA | other | downstream | 2018763 | 6196107 ~ 6197210 (-) |
| G433670 | NA | other | downstream | 2174690 | 6041014 ~ 6041283 (-) |
| G436446 | NA | other | upstream | 1439335 | 9656279 ~ 9671776 (-) |
| G436626 | NA | other | upstream | 1618081 | 9835025 ~ 9836323 (-) |
| G436643 | NA | other | upstream | 1805204 | 10022148 ~ 10025375 (-) |
