G436058


Basic Information

Item Value
gene id G436058
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8285037 ~ 8286453 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500561
CTTCCTGTTTTTGTGCTCTAGAAGAGCCCACAATCCTTCAGGTTGTTTTTGATGATGACATCGGTGACAGCGTCGAAAACGAACTGCACATTCTTGGTGTCTGTGGCACAGGTGAAGTGAGGGTATATCTCCTTGGTTTCTTTCTTTTTGTTCAGGTCCTCAAACTTGCTGCGGATGTACTCGGCGGCCTCGTCGTAGTTGTTGGCACCTGTATACTCAGGGAAGCAGATGGTCAAGGGGCTGTGTGTGATCTTCTGCTCAAACAGATCTTTCTTGTTGAGGAAGAGGATGATGGAGGTCTCGGTGAACCACTTGTTGTTGCAGATGCTGTCGAAGAGCTTCATGCTCTCATGCATTCGGTTCTGTGGTGGAATTAAGAAACGGTTCAGTATTCAGGCCTGTATTGATGAATGACAGCCTGAAATATGATGAAACTACACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500561 True 441 lncRNA 0.46 2 8285037 8286453

Neighbor

gene id symbol gene type direction distance location
CI01000306_08208426_08210350 NA coding downstream 74667 8208224 ~ 8210370 (-)
CI01000306_08143309_08144833 CHCHD4, CHCHD4A coding downstream 138637 8143139 ~ 8146400 (-)
CI01000306_08077693_08108117 DNAH1 coding downstream 176920 8077609 ~ 8108117 (-)
CI01000306_08061250_08076179 MAPKAPK3 coding downstream 208858 8061250 ~ 8076179 (-)
CI01000306_08045293_08057171 F264, PFKFB4B, PFKFB4, PFKFB4A coding downstream 227866 8044642 ~ 8057171 (-)
CI01000306_08349295_08353547 TRAIP coding upstream 62703 8349156 ~ 8353547 (-)
CI01000306_08521837_08523740 NA coding upstream 234580 8521033 ~ 8523770 (-)
CI01000306_08533490_08558727 SEMA3FB, SEMA3F coding upstream 246975 8533428 ~ 8559154 (-)
CI01000306_08596204_08597372 NA coding upstream 309422 8595875 ~ 8598404 (-)
CI01000306_08690665_08696165 ARL8BA, ARL8B, ARL8BB, ARL8A coding upstream 404212 8690665 ~ 8696165 (-)
G436120 NA non-coding downstream 25597 8258082 ~ 8259440 (-)
G436116 NA non-coding downstream 28768 8255617 ~ 8256269 (-)
G436114 NA non-coding downstream 30413 8252976 ~ 8254624 (-)
G436113 NA non-coding downstream 34603 8246880 ~ 8250434 (-)
G436099 NA non-coding downstream 68093 8215973 ~ 8216944 (-)
G436167 NA non-coding upstream 79237 8365690 ~ 8365996 (-)
G436182 NA non-coding upstream 113111 8399564 ~ 8401948 (-)
G436180 NA non-coding upstream 118271 8404724 ~ 8411934 (-)
G436193 NA non-coding upstream 143306 8429759 ~ 8430374 (-)
G436198 NA non-coding upstream 156538 8442991 ~ 8443207 (-)
G434338 NA other downstream 1418101 6866656 ~ 6866936 (-)
G434086 NA other downstream 1832786 6437406 ~ 6452251 (-)
G434016 NA other downstream 1923394 6355180 ~ 6361643 (-)
G433985 NA other downstream 2087827 6196107 ~ 6197210 (-)
G433670 NA other downstream 2243754 6041014 ~ 6041283 (-)
G436446 NA other upstream 1369826 9656279 ~ 9671776 (-)
G436626 NA other upstream 1548572 9835025 ~ 9836323 (-)
G436643 NA other upstream 1735695 10022148 ~ 10025375 (-)

Expression


Co-expression Network