G436182


Basic Information

Item Value
gene id G436182
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8399564 ~ 8401948 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500708
CTGTACTTCCTTCAATAGAGTAACGGCCCTCCACTCGGCCCTCATGCACTTTTGCCGTGACGTTCACTGGTTTAAAAGGTGGCTCTGTCACCCCAGAGCGGATCTTACACAATAAGTGTGTACTGTTGCTTTTGTGAGGCTGGACCACACAGGCGGTCTCACCCAGCTTTACCTCATGGGTTCTGGTCGTGATGGTGGGTCGCAGGGGCGACTGGAACTCCCATCCGCACAGAGTCATCTCACTCTGACCATCAGGGGGCGCTGTTTTGGGGAAAACTCTGTGATGCCGGGGGGACATGACTCATTTCCCCAGTGTGCCCTGCACTCAGAAGCCCAGGTGCACTGACCCGAGCACCAGCCACATCCCATGAACTTTGGTGCGGTCAGGCACATGGCGCATGTGAGGAAGTGCCGGCAACCTGGACCTCTCTGAGGCACCTGAATCATCTGCCAGTTATGAATATATAACTGTTATTAGCCCAAAGAAAGACTAAAGCCTTCTGGAAACTTGGCCTGGTCCACTTGAAATATTTCTGCATACTACTTAAAAAGATTTATGTGAAATCATGATTGGTTTGAATTGGTCCATCTGGTTTGTTCCTTTTTTTTTTCTGATACATACCTTATCTCCAACTACAAACAGTAGATGGTCTGGGGAGAGAACCGCTGCAGTAGACGATACCTTCTGGTTTTCTACAAGGGAGTAATTAGCAAAGATGACAGGGCTGGACCTTCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500708 True 738 lncRNA 0.49 3 8399564 8401948

Neighbor

gene id symbol gene type direction distance location
CI01000306_08349295_08353547 TRAIP coding downstream 46017 8349156 ~ 8353547 (-)
CI01000306_08208426_08210350 NA coding downstream 189194 8208224 ~ 8210370 (-)
CI01000306_08143309_08144833 CHCHD4, CHCHD4A coding downstream 253164 8143139 ~ 8146400 (-)
CI01000306_08077693_08108117 DNAH1 coding downstream 291447 8077609 ~ 8108117 (-)
CI01000306_08061250_08076179 MAPKAPK3 coding downstream 323385 8061250 ~ 8076179 (-)
CI01000306_08521837_08523740 NA coding upstream 119085 8521033 ~ 8523770 (-)
CI01000306_08533490_08558727 SEMA3FB, SEMA3F coding upstream 131480 8533428 ~ 8559154 (-)
CI01000306_08596204_08597372 NA coding upstream 193927 8595875 ~ 8598404 (-)
CI01000306_08690665_08696165 ARL8BA, ARL8B, ARL8BB, ARL8A coding upstream 288717 8690665 ~ 8696165 (-)
CI01000306_08699884_08701812 BHLHE40 coding upstream 296621 8698569 ~ 8703451 (-)
G436167 NA non-coding downstream 33568 8365690 ~ 8365996 (-)
G436063 NA non-coding downstream 112022 8266669 ~ 8287542 (-)
G436058 NA non-coding downstream 113111 8285037 ~ 8286453 (-)
G436120 NA non-coding downstream 140124 8258082 ~ 8259440 (-)
G436116 NA non-coding downstream 143295 8255617 ~ 8256269 (-)
G436180 NA non-coding upstream 2776 8404724 ~ 8411934 (-)
G436193 NA non-coding upstream 27811 8429759 ~ 8430374 (-)
G436198 NA non-coding upstream 41043 8442991 ~ 8443207 (-)
G436211 NA non-coding upstream 66414 8468362 ~ 8468600 (-)
G434338 NA other downstream 1532628 6866656 ~ 6866936 (-)
G434086 NA other downstream 1947313 6437406 ~ 6452251 (-)
G434016 NA other downstream 2037921 6355180 ~ 6361643 (-)
G433985 NA other downstream 2202354 6196107 ~ 6197210 (-)
G433670 NA other downstream 2358281 6041014 ~ 6041283 (-)
G436446 NA other upstream 1254331 9656279 ~ 9671776 (-)
G436626 NA other upstream 1433077 9835025 ~ 9836323 (-)
G436643 NA other upstream 1620200 10022148 ~ 10025375 (-)

Expression


Co-expression Network