G435345


Basic Information

Item Value
gene id G435345
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8868477 ~ 8869824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU499738
TCAGAAACTTCCCTCAGAAAGGTTTTAGGAAGCATCTTCATTAAGTAAAAAGTCTAAAAAACAGTCGCACTTTAATCATGTCTGCACAGTCGGCTTATATCAAACAACAATCTTATGGCTTCATGTGATAGGCAGTGGACGGTCTATCTTGCGTTGCCAAACACTAGAAGGCTGCCTGCCAGATTTACTTCGTCCTCTTGAGAAGCTCTTTGATATCTGCTTCAATGTCGCTGGTGAGGAACCTTCTGCTGTACCGCTTGAACGGTTCCCCGTCCGGGCCAATGAGGAACTTCTCAAAGTTCCAGGCGATGTCATTCCTGTTCACGGGACTCCAGATGATGAATTTGGGATCACCCATCAGGGACACAGCGTCATCACTGGGTTGAGGCAGCTTCTCTTTCAGGAACACAAACAGAGGGTGGGCGTTCTCACCATTCACTTCCAGCTTCTCCAGAAGCTGGAATTTGGGCTCGAAGCCATTTCCCGGACGGACATACTTCAGAGATTTCAGAATTTCATCATTCTTGCAGTTCTCCTGGATGTCCGAACTGGTTGCAGGGAGCGCCCAGAATAACCAGCCCCTGATCAGCATAACAACTGTGGAGCTCGTTCATCTGAGTGTAATCCCTGACTGTTGTGCCTCAAAGCGACGCCACATTTTCAATAAGCACAACTTTACCTTTGAGAGACGAAAAATTCAGGAGGTCCCCTGACAAAAGCTTGGCGGACAGATCATAAAACTTCTTCATGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU499738 True 753 lncRNA 0.47 2 8868477 8869824

Neighbor

gene id symbol gene type direction distance location
CI01000306_08866470_08867329 NA coding upstream 711 8866428 ~ 8867766 (+)
CI01000306_08599141_08604219 NA coding upstream 264168 8598985 ~ 8604309 (+)
CI01000306_08571500_08571802 NA coding upstream 296311 8570585 ~ 8572166 (+)
CI01000306_08508559_08518460 CAMKVA, CAMKVB, CAMKV coding upstream 349126 8508559 ~ 8519351 (+)
CI01000306_08388107_08410565 MST1R, MST1RB coding upstream 456714 8387407 ~ 8411763 (+)
CI01000306_08871809_08919326 NA coding downstream 1985 8871809 ~ 8919997 (+)
CI01000306_08932674_08949522 GRM2B, GRM2A, GRM2 coding downstream 62644 8932468 ~ 8949738 (+)
CI01000306_08966130_08967440 NA coding downstream 95278 8965102 ~ 8968176 (+)
CI01000306_08973033_08975478 NA coding downstream 103209 8973033 ~ 8976808 (+)
CI01000306_08984163_08984476 NA coding downstream 114339 8984163 ~ 8984704 (+)
G435407 NA non-coding upstream 7226 8861002 ~ 8861251 (+)
G435406 NA non-coding upstream 7599 8860662 ~ 8860878 (+)
G435405 NA non-coding upstream 8560 8859589 ~ 8859917 (+)
G435309 NA non-coding upstream 177387 8685288 ~ 8691090 (+)
G435257 NA non-coding upstream 373701 8491350 ~ 8494776 (+)
G435408 NA non-coding downstream 352 8870176 ~ 8870383 (+)
G435409 NA non-coding downstream 736 8870560 ~ 8870877 (+)
G435438 NA non-coding downstream 219231 9089055 ~ 9089347 (+)
G435446 NA non-coding downstream 249351 9119175 ~ 9119512 (+)
G435447 NA non-coding downstream 280096 9149920 ~ 9150238 (+)
G434545 NA other upstream 1748618 7119317 ~ 7119859 (+)
G433724 NA other upstream 2738699 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 2760302 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 2882189 5975822 ~ 5986288 (+)
G432958 NA other upstream 3208308 5658928 ~ 5660169 (+)
CI01000306_09225597_09230504 NA other downstream 355741 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 404075 9263589 ~ 9289035 (+)
G435590 NA other downstream 843025 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 990389 9860480 ~ 9865724 (+)
G435639 NA other downstream 1010096 9878664 ~ 9884919 (+)

Expression


Co-expression Network