G436469


Basic Information

Item Value
gene id G436469
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9332973 ~ 9396739 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU501011
TGATTACAAGCAAAATCAGCATTAATGATTAGTTTTTGTGGGCAGGAAGGTTGATGACTTGTTAAAGGAACAGACCATTACTTTTTGGCATCACACTTAAAATGTTCAGCATCAAACAAAGTCAGTATGGAAACTTCAGCACTTAAATGATCTGCTTGTAAAAATATGAGGAAAATAGTTTTATATTACTAAAACATTTTATATTAACTTCATATTATCAGTGTTGTTGTAGTATTTTTATACTTTTATAGTGTTTATTCATATTTTGAGTTGGCTTTTATTTTTGTATTGTCAGTTTTCCTTTTATTTTAGTTTTTAATACTTCAACTTAAATTTATATGTGACCTGGACCACAAAACCAGCCATAAGTCGCACGGGTATATTTGTAGCAATAGCCAACAATACATTATATGGGTCAAAATTATCGATTTTTCTTTTACCTATTGCCACCTATTGCCAACAAAACAGACATTTGAAGCAGTTTTACTCACCACCTGCAGTTCAGGCTCATGACCGGGATCATTATCGCTGTGACCGCTCCATCTTTCAGTTTCAAACGATCTGTAAATCCAGCGTAGAACTGGGCCTTGTTTATGAAACCATAAGCGCCGATCCTGAGGGCTCGAGCAACCACGGAAAACACAAGCTATTCTCCATTCATTTTAACCAATAAAAAAAGTGATTGAAACTATCAGTTTCTATGGTTATTTTATTAACAAATATCGAGAGCACATCAACGTAATGCTTGAGCACAAATCTCTCAGCTCCACTGGGTTCTTTGGGAAGCAAGGTTATCTTTCCCTCACAACCAAAAACACACTTCTTTGGTGACATTATTGATTTCGTGGTCTAAAAACAAAGTGAAAAATCTTTCTCGAGCAAGTCCTGTGCAGCGCTGCTGATGACTTCCGTAAAGCCGAACGAAGCGCGTTGATGGGCGTGCTCTTGCTCTCTCTCTGGTCAACGTGTGCGCGCGCGCTCTTCCGGGAGAAGTGCCCGTACAGGGAATTATGCCCCCGTTGACGTCACACAGGCCCATACTCGAAAAAACGACCCCGAAGTTTGTGAGGATTTGAAAGAGTATTTTTGGCACAGAAATACTCCATCATACGTCCAACTCGTGTTTTGAAACTTTGGCCATGTTTAGCATGAGAGTCCAACTCTTTAACAGTGTAAATAAGTCAGAATGCATGAAATAGCATTATACCCCCTCTTTAATTAAAGATCATGTTCCATGAAAATATTTTGTAAATTTCCTACTGTAAATATATCAAAAATGTATTTTTGTGAGTGGATATGAGTTGCTAAGGACTTCATTTGGACAACTTTGTTCAAAGGTAATTTTCTCAATATTTAGATTTTTTCGCACCCTCGAATTCCAGATTTTCAAATAATTGTATCTCGGCCAAATATTGTCCTATCATAACAAACCATACATCAGTAGAAAAGCTTATTTATTCAGCTTTCAGATGATGCATGAATTTCAAAAAACTGACTCTTATGACTGGTTTTGTGGTCCTGGGTCACATTTTATTTCAGTTTATTTTAGTTGCAACATTAAGTGTGAGTTTTTCCATCAAATATTTATTTTATTTTATTTTATTTTATTTTATTTTAATGCCTTGTTAATTTTACCTAGTTGTTATATAAATACTTGAAATGTTGTTAAGTTAAATGCTGGACATGAGGAGGGTGGTGCTGGAAAGTGATGGTGTTCCTTTAAGAGCAGTGATGGAGTTTCTGTGTGTGATCTCTGTGGTGGTGCTACTTAAAATCCTGTACCTCACAATCACTGTCCAGTTTCAAACAATAATATAGGGAATACACACACATATGTAGCTATTTAGATGTATATTAGTTTTGTGTCTCCTTTCACACGGCTGTCACTCTGCTTTCTGAGCTACAGTGCTATTTTTTCTGGAGTTTCTCATGTCCCAGCGTCCATATATAAATGTATATATGTGTATATTGTATACGTCCCTATAGATGTTTGTATTGTGGCCATTTTCATTGGATGTGTTGTACATTGAGTCTCTGTACGTGTCCTTGTATAGTATGAATGTGGACATGTGATATGTGTTTATGAGAGTTTGTGGGTGTTTGTATGTGAGAGAGAGTTAGAGAGTGCCTATGTCTTGTCTTTATGTTTTTTTGTTTATTTTTTTTCCTCTATATATTTTCTGCTGTTTGTGCATTTCAATGGTGATAAAACCTTTAAGAGGTTTCACAAGGTCTTCTATCAAGCCTATCAGACTACATTTTTGCTGTTTTAGAAGAGATAGTTCACCCAAAAATGAAAATTGTCATCATTTACTCACCTTTTTTCCTGTAGAAATCTTCAATAATGAATTGATCCTTCTTTTTTCTGCAATAAGCAGAAAATAAATGAAAAAACTATAAATGTCATAAAAGTGGTCTGTATTACCTAAGGCCCATTCATACCAAGGATGATAACTATAACGTGAACAATAAAGATATAGTTTTAAAGTTGTTCTAAATATAAAATAATAGCAGAATCTATACAACTATAACGATAACAGCACAGAGAAACAATATCATTGGAATCATTTTCAGAACAATTTATTCAGCTGATGAACAATAAAAACTTTGACAGCCAATCAGAATCCATCCTGCTTTAAAAAGCTTGAGCATTTAAAGTGGCAGATGACAAAACTGCAGAGCACTATTATAATAAATAGAATGATATTGGACATTGATGTCGATATCGATATGATTCTATCGATATGATTCTTGGTGTGAACAGGCCTTTAGGTTTTTTTTGTTTTTTTTTTGGAAACATATTTATATGCAGGTAATTATTCCCCTATTTAACATTGCAGCTTGATATTTGAGTCAGTGAGTTGATTTGTGAATGAATCATTCAGATCAGTTTTGTGAACTGGATTCAATGAAAAGAACTTACAAGAATGTTTTGTTAATGAATCAGACTTCACTACTTCTTTAATGAACAGCACAGATTCAAGATTTTCAATGAATAGCAGGTTAAAATTCACGTGGAATATGGCATAAGTTGTGTGGACCACTTTTAAGATACATTTATTGTGTCATTTTGGAGCTCGTCATTCACTTTCATGATATTGCAAAAAATGTGGTCTGGAAATTCTTCAAAAATTCAATCTGGTTTGAAACAACATGAGGGTGATGAAATGTTATTTTTGGGTGAACACTTCCTTGAATTTGTTCATCTGTTTATCAAATAATTATTTTATCATTTTAAAAACCTTGTGAAACTCATTTTATCACTCATTGTTGTAGTGGCTTGCAGGCTTGCTGAATTCTGCAATTATAGATATAAAGCATCAGATCAAAGACAGCAGGTACAAATCATTGGTTTCTACCCGGATGTGTCTTGCTGTCTGATCTGTTATGCTTGTACAGTATCTATACTCATTAATCCTCACTCGGGGGTATGTGTGACTTTCACCCAATCTTGCGGTGGTTGGAGTGACTGGTTTGCCCATCCCCTGTTGCATGCTGGGATATGTCCTGCTAACATTAGCTTCATTTTCTGCAGATGGCGCTCGGCCACCCGCTCCATTCTCCTCCGGTCAGTTCCCAGGCGGTGTAGTCCGTTTGAAGTTTGCACTTCCTCTCTTCCAATACTTCCTGTTCACCTCCAGACAGAATGGCCCTGGAGCTCAGAGCTGATTTACATAACGAGTGATTAAAATATCCAAGCTGAGCGTCCAATCACTAGCAAACTAATAAAACACCATCAGTGTGTTATACAGAGATGTTCATCAGGTAGAATCTTCTGAGTAGAGCTCAACAGTATTTCCCTGAATGGCAGCACAGGCTCGTTGTATCACATCTAACAGTGGCTGTTCAGTGTTACGAGATGCAGTTAATATGTACCTGTAGTCTGTCTGTCTGCTGAGTGACTGTCTGTCTCTCTGTTCTGTCTTCCTTCAGTGAGCTCTTAGAGCTCTGAGGAGTGAGAGCTTGAGTAGAGCAGGTGTGTAGACTTCAGACAGGCTGCATGACCTCCATTACTGCTTATGTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTGTTTTCCTTTCTGCTTTTCTCCTCTTCCTTCCTTTCTTGTTTTCCTTTCTGCTTTTCTCCCCTTCCTTCCTTCCTTCCTTCCTTGTTTTCTTTTCTGCTTTTTCTCCCCTTCCTTCCTACTTCATTTCTGCTTTCCTTGCTTCATGCTTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTTCTTCCTTCCTTCCTTTCTTGTTTTCCTTTCTGCTTTTTTCTCATAGTTGCGAGTTATAAAGTCAGAATTGCATATTATAAATATATATTTCAGACAGTTCTTGCAATTCAGACTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU501011 True 4364 lncRNA 0.37 3 9332973 9396739

Neighbor

gene id symbol gene type direction distance location
CI01000306_09290422_09292579 NA coding downstream 40154 9290104 ~ 9292819 (-)
CI01000306_09067901_09077320 USP48 coding downstream 254960 9067235 ~ 9078013 (-)
CI01000306_09054500_09064951 NA coding downstream 268022 9054169 ~ 9064951 (-)
CI01000306_09017460_09019520 PSMA5 coding downstream 313104 9017002 ~ 9019869 (-)
CI01000306_09013366_09014513 PSMA5 coding downstream 318460 9013071 ~ 9014513 (-)
CI01000306_09522093_09523814 NINJ1 coding upstream 125294 9522033 ~ 9525553 (-)
CI01000306_09628418_09641286 NA coding upstream 231082 9627821 ~ 9641286 (-)
CI01000306_09690177_09739046 ERC2 coding upstream 293195 9689934 ~ 9739046 (-)
CI01000306_09753380_09774568 NA coding upstream 355629 9752368 ~ 9774784 (-)
CI01000306_09801952_09806496 BSNB coding upstream 405208 9801947 ~ 9808800 (-)
G436495 NA non-coding downstream 44783 9286160 ~ 9288190 (-)
G436555 NA non-coding downstream 72400 9255446 ~ 9260573 (-)
G436426 NA non-coding downstream 81964 9204059 ~ 9251009 (-)
G436415 NA non-coding downstream 211982 9120627 ~ 9120991 (-)
G436413 NA non-coding downstream 215911 9116774 ~ 9117062 (-)
G436476 NA non-coding upstream 108909 9505648 ~ 9562605 (-)
G436451 NA non-coding upstream 150970 9547709 ~ 9549810 (-)
G436603 NA non-coding upstream 179509 9576248 ~ 9577239 (-)
G436458 NA non-coding upstream 186867 9583606 ~ 9585632 (-)
G436455 NA non-coding upstream 196118 9592857 ~ 9593480 (-)
G434338 NA other downstream 2466037 6866656 ~ 6866936 (-)
G434086 NA other downstream 2880722 6437406 ~ 6452251 (-)
G434016 NA other downstream 2971330 6355180 ~ 6361643 (-)
G433985 NA other downstream 3135763 6196107 ~ 6197210 (-)
G433670 NA other downstream 3291690 6041014 ~ 6041283 (-)
G436446 NA other upstream 259540 9656279 ~ 9671776 (-)
G436626 NA other upstream 438286 9835025 ~ 9836323 (-)
G436643 NA other upstream 625409 10022148 ~ 10025375 (-)

Expression


Co-expression Network