Gene
RNA
| Item | Value |
|---|---|
| gene id | G436442 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 9593933 ~ 9595287 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU500984 | True | 231 | lncRNA | 0.46 | 2 | 9593933 | 9595287 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_09522093_09523814 | NINJ1 | coding | downstream | 68380 | 9522033 ~ 9525553 (-) |
| CI01000306_09381571_09461159 | CACNA1DA, CACNA1D | coding | downstream | 132360 | 9381187 ~ 9461573 (-) |
| CI01000306_09374084_09380300 | NA | coding | downstream | 213427 | 9373287 ~ 9380506 (-) |
| CI01000306_09309973_09348444 | CACNA2D3 | coding | downstream | 245489 | 9309973 ~ 9348444 (-) |
| CI01000306_09290422_09292579 | NA | coding | downstream | 301114 | 9290104 ~ 9292819 (-) |
| CI01000306_09628418_09641286 | NA | coding | upstream | 32534 | 9627821 ~ 9641286 (-) |
| CI01000306_09690177_09739046 | ERC2 | coding | upstream | 94647 | 9689934 ~ 9739046 (-) |
| CI01000306_09753380_09774568 | NA | coding | upstream | 157081 | 9752368 ~ 9774784 (-) |
| CI01000306_09801952_09806496 | BSNB | coding | upstream | 206660 | 9801947 ~ 9808800 (-) |
| CI01000306_09825468_09827244 | NA | coding | upstream | 229288 | 9824575 ~ 9827282 (-) |
| G436455 | NA | non-coding | downstream | 453 | 9592857 ~ 9593480 (-) |
| G436458 | NA | non-coding | downstream | 8301 | 9583606 ~ 9585632 (-) |
| G436603 | NA | non-coding | downstream | 16694 | 9576248 ~ 9577239 (-) |
| G436476 | NA | non-coding | downstream | 31328 | 9505648 ~ 9562605 (-) |
| G436451 | NA | non-coding | downstream | 44123 | 9547709 ~ 9549810 (-) |
| G436449 | NA | non-coding | upstream | 6062 | 9601349 ~ 9623391 (-) |
| G436437 | NA | non-coding | upstream | 6597 | 9601884 ~ 9612120 (-) |
| G436605 | NA | non-coding | upstream | 7107 | 9602394 ~ 9603376 (-) |
| G436480 | NA | non-coding | upstream | 29794 | 9625081 ~ 9626409 (-) |
| G436500 | NA | non-coding | upstream | 53197 | 9648484 ~ 9648780 (-) |
| G434338 | NA | other | downstream | 2726997 | 6866656 ~ 6866936 (-) |
| G434086 | NA | other | downstream | 3141682 | 6437406 ~ 6452251 (-) |
| G434016 | NA | other | downstream | 3232290 | 6355180 ~ 6361643 (-) |
| G433985 | NA | other | downstream | 3396723 | 6196107 ~ 6197210 (-) |
| G433670 | NA | other | downstream | 3552650 | 6041014 ~ 6041283 (-) |
| G436446 | NA | other | upstream | 60992 | 9656279 ~ 9671776 (-) |
| G436626 | NA | other | upstream | 239738 | 9835025 ~ 9836323 (-) |
| G436643 | NA | other | upstream | 426861 | 10022148 ~ 10025375 (-) |
