G435589


Basic Information

Item Value
gene id G435589
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9697429 ~ 9698325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500011
TCCAGGAAACAGCATAAATATTTGCAATCATCATCAATTTAACCACTAGGAGATGCATTATTGACGGCAGCTCTGAGAGTACAGCGCGGTTTGTACCGCATCAGTAACAAAACAGCCATTGACATCAGCATTTTGATGTTATATCCCTGCAGAATTTTATATTTAGCAGTACAGTAGAAACTGTCAACTGATGCTGTGAGATAACGGCAAAACGAGAGATCAGTCCTGACTCCTGATGCTGCTTTATTAAAATTGCAGACTTCATAAATACGTTTCAGCTTGTCAAATCTTTACACTACCAGGGAAATGTTAAAACATATTTATTCATTGCTTATTTTTACTATTTTCAACATTTTATATAGTGATAGTGAAGTTTATGGAACATTGTAGTATTTATTATAAAACAATGTATATATTCAGATCATTTTTTAAATTCATGTGCCCTCATAATCTTTAATCAAAATAACTTCCCCTCCCTCTTGCAGTGACTTTCCTTCTCTGATGATGTGTTTACTGGCGTGAGGGTGGGGCAACCTGTCACTTACATGATCCAGCAATAGAAAACGACAACCATCCAATCAATTCCCGGTGGACAAAATCAAGTCCCGCTCTACATTTTTTATTCACTCGGACATACGTCACAATAGTATGGAAGCTTGTTTCCGCCATTAAATAAAAAATAAAAAAGGTAATTGTGACTTTTTATCTCACAATTTTGACTTTTTTTTCTCAGAATTGTGAGATATAAACTCACAATTGTGAGTTATAAAGCCAGAATTGCATGATATAAAGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500011 True 795 lncRNA 0.35 2 9697429 9698325

Neighbor

gene id symbol gene type direction distance location
CI01000306_09674684_09680504 CRELD1 coding upstream 16756 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 25663 9655395 ~ 9671766 (+)
CI01000306_09625036_09626067 NA coding upstream 70488 9624960 ~ 9626941 (+)
CI01000306_09559074_09602026 NA coding upstream 95183 9558978 ~ 9602246 (+)
CI01000306_09548430_09553502 WNK2 coding upstream 143927 9548430 ~ 9553502 (+)
CI01000306_09851578_09857742 HP1BP3 coding downstream 152902 9851227 ~ 9858552 (+)
CI01000306_09860935_09865155 SH2D5 coding downstream 162610 9860480 ~ 9865724 (+)
CI01000306_09866302_09875270 KIF17 coding downstream 167977 9866302 ~ 9875717 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 193333 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 223745 9922070 ~ 9936407 (+)
G435540 NA non-coding upstream 94033 9602427 ~ 9603396 (+)
G435554 NA non-coding upstream 217336 9436545 ~ 9480093 (+)
CI01000306_09296908_09305617 NA non-coding upstream 391262 9296809 ~ 9306977 (+)
CI01000306_09263755_09288503 NA non-coding upstream 408867 9263589 ~ 9289035 (+)
CI01000306_09216004_09219290 NA non-coding upstream 441739 9215829 ~ 9219563 (+)
G435590 NA non-coding downstream 6382 9704707 ~ 9737144 (+)
G435609 NA non-coding downstream 47509 9745834 ~ 9748829 (+)
G435637 NA non-coding downstream 179315 9877640 ~ 9877881 (+)
G435639 NA non-coding downstream 180339 9878664 ~ 9884919 (+)
CI01000306_09225597_09230504 NA other upstream 470923 9225512 ~ 9231333 (+)
G434545 NA other upstream 2577570 7119317 ~ 7119859 (+)
G433724 NA other upstream 3567651 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 3589254 6106143 ~ 6108175 (+)
G436932 NA other downstream 1384663 11082988 ~ 11098376 (+)

Expression


Co-expression Network