G435590


Basic Information

Item Value
gene id G435590
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9704707 ~ 9737144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500013
TATTTAGTGGCGGAAATGGGCTTCCATAGTTTTCTATTTTAATATATTATTAAAAATGTAAATAAAAATAAATAAATTAAATGTAATTTATTCCTGTGATGCAAAGCTGAATTTTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTGCTGCTCAAGAAATTTTTATTATCAATGTTGAAAACATTTTTATTGAAATGTGATGCATTTTTTCAGTGTTCTTTAATGAACAGAAAGTTCAGAATAACAGCATTTATTTTTTAAAACAATGTAAAAGTCTTTATTATAGTCAGTTGGATCAATTTAATGCATCCTTGCTGAACAAAAGTACTTTCTTCAAAAAAATCTTTTTAACCCCAAACTTTCGAAAGGTAGCGTAATATATATTGCTAAAATTAAATAGCAAAAACATATCTATTTTTTCTTATTTTATGTAATATTTATTCACTACAAATATCCCAAAACAAAAATGTGCAGTTTCTATTGACAAAGCTGTCAGCTGATTCTGGAGTCAACACAAGAGGGAACAACCACTTTTATTAAGTGCCAAAGTGGCACAGTTAATGACCGATTCTGATAATCCTAAAATGTGTGAAAATATTGAATTATCATGATGCCAGAAGGAAAATCATACCTTTTGTAACTGTGTCTCCAATTTATTGCATTCCTCTTTCTTCTGCTCGATTGCGATCTCAAGAGACTTGAGTTTGGAGTCTTTCTTGAGACCCGATGAGGCCAGTGAGGAGGCGTGTTCTTTTAAATCTATGAGACTCGACTGGAGGAGGAGGAAGACGAGACGAGAGCTGACAGTCTGACCAAAAACTCGAAGAAAACACAACAGACATGCATGCAATCACTGACGTACCTCTTTCTCTGTTAGCTCCAGCTGTAAAGAGTTCACCTTTTCTTTCAGGTCTTTATTCTCTTTTTTATATGAGTCCACCTCCTCTAGTCTCTCTCGGTCTTCCCTCTCTCTTTGCTCTTTCAGGCGCTCAATAATTCGCTCCTTCTCAGACAGAGCTTCCTCTAGCGTGGCGAGGGCAGTATCGGTGTTGCTAGAGTCCGTCTGGAGAGACTTCACTCTGTCCTTTAGATTCCCGAGCTGTTTATCTTTATCCCTCAGCTGCTCCTGAAGGTTTTCAATCTTCTTCTGCAGGACGTTGATCTTGCGTTCTTTGACTTCCAGCATGTCTTTCATGTCTCTGATTTCCCCAGCCAGTGTTCCCTTCTCCTCGGTCAAGTCTTGCAATTGCTTCGTCTTCTTATTAAGGAACGATTCCTTCTCCTCCAGACGCAATCGAAGAGCGTCCACCTCTGTTTGAAGGATGGCAGCGCGTTGCTCTTTGGCAGTGAGGGACTCTTTGAGCACTTCAATATGCTGTTTGCAGTCTGAATTCTGATTATTCAAAGTTTCCAGTTTTGTTTGCAGAGCTAAAAGCTCAGATTCTTTTTTCGAGAGCTCCTGCTTGAGCTGGTCAATCTTGGTCTTCATGAACTTGGAGTGGTTTTTGTAGACCTCCATCTGTTTGATCTCCTCCTCTCGATCCTCTGTGTTCAGCAATCCATTCGCCTTCAACATCTGTATCTCATCCTCCAGATCCCGAATGTTGCGCTCCAAGGATGCGATTTTGGTGTCCTTCATCTCTATAATAGTCTGAAGAGCTTTAGTTTTTCCAGGGTCTGGGTGAAGCTGGTTTCTGCGATGAAGCTCCTCTCTCAGATGGATGTTTTCCTTCTCTTTCTGGTCTAATATCACCTCTAGGTGGCCCAGCTGAGCTTCGGCTTCTGCAATACGCCTGGCTCGCTCTTGCTCCTCCTCATCTGATGCCCTTCCTGAGGCTGGGGGAAGCCCTTTACTCTGCAACATCTCCAAAAGCTTCTTTATGGACTCGTCTCTGGCTCCCAGTGTCTGTTTCTGTGTCTCGATCCTCAGCTCCATCTCCTCCAGCGTTTTCCTCAGGAGGAAGAGCTCTTTGGCCTGACGGTCGTGTTCTGCTTGGAGCCGACGGAAGTTCTCTTCGGTCAGCTCAATGGTGGTAAAGTGCTCGCCCCCACCGGCCCGTGACCCGCTCTCCTGCTGGAGAAGATGGTTGAGGTCGCGTTGAGTCCTCAGCTCGTCCTGCAGGGCCTGAATGGTCAACTGGAGGTGCTGGAGAAGGAAGGGAAAGTAGAGATGAACATAACAGGCTTTGGGATCTTCATTGAGACAATAATCAGAGGGTTTCCTCAACCAGACCCATTCAGAACATGTTTTAAGATCGAAAACATAAGGTTAGATTTGAGAAAAACACTATATAGACCCCAC
>TU500012
CCCTGTTTTTGTGTGGTCAGTATGAACTTTTCTGTCCTATGTTTGTGTTCAACAAACATACAACAACATGAGAGTAAATAATGAATTTTCATTTTTAAGTGAACTATCCCTACACATAATCAGTAACATCACAGATATATTGTGCATTTTACTTTATCAATTACCTGCATAAACTGATTTCTTTGTGTCTATGGCTGTTTATAGTTTAAAGCTCCTTAAAGAAGTTGTTTACCTTGGTCTTCATGAACTTGGAGTGGTTTTTGTAGACCTCCATCTGTTTGATCTCCTCCTCTCGATCCTCTGTGTTCAGCAATCCATTCGCCTTCAACATCTGTATCTCATCCTCCAGATCCCGAATGTTGCGCTCCAAGGATGCGATTTTGGTGTCCTTCATCTCTATAATAGTCTGAAGAGCTTTAGTTTTTCCAGGGTCTGGGTGAAGCTGGTTTCTGCGATGAAGCTCCTCTCTCAGATGGATGTTTTCCTTCTCTTTCTGGTCTAATATCACCTCTAGGTGGCCCAGCTGAGCTTCGGCTTCTGCAATACGCCTGGCTCGCTCTTGCTCCTCCTCATCTGATGCCCTTCCTGAGGCTGGGGGAAGCCCTTTACTCTGCAACATCTCCAAAAGCTTCTTTATGGACTCGTCTCTGGCTCCCAGTGTCTGTTTCTGTGTCTCGATCCTCAGCTCCATCTCCTCCAGCGTTTTCCTCAGGAGGAAGAGCTCTTTGGCCTGACGGTCGTGTTCTGCTTGGAGCCGACGGAAGTTCTCTTCGGTCAGCTCAATGGTGGTAAAGTGCTCGCCCCCACCGGCCCGTGACCCGCTCTCCTGCTGGAGAAGATGGTTGAGGTCGCGTTGAGTCCTCAGCTCGTCCTGCAGGGCCTGAATGGTCAACTGGAGGTGCTTGTCCTCCTGGCGTCCATCAGGTGCTGATTCTCCTCATGGGTCACCCGCATCTGTTCTTTGAGAATAGACGTGCGCGCTGCCTCCTCTTTCCTCATCACACGTTCTTTCTTCAGCTCGGGGCTCCAGAAGCTCTTGATGCTGTTGGTGGAGGAGCCCAGCTTGCTGTCCTTCAGGTCCAGCTCCCTCCGAAGGAGATCGTTTTCTCTCTGCATGTCCCGTAGCTGCGCCTGGAGCTCCAAAAGTTCACCGCCACCGCCCCTGACCGCCTGTCGCAGCAGGGCAGACGGCGTCCCCTGGTGGTGGAGCATAGACAGCGAGCCCAGGTCACCGTAAGACAGCAGGTCGGCGTGTGGGATTCCTGCCGTGGCGATGTTAGGGGTGCTGCCCATGGCCGTGACCCGAGCGCCATACATCGCTCGACTTGTGGCCCGACCGAGCGTCATGGTGCCTTTGGGGTAAGTAGCCGTGGAGCCAACGGCTTCATGGTCGCTCAAGTACATTGGGCCAGATGTGGCGTAGGCAGCATTGAGGGACTGGATGTTCTCCATGGATAAGGTCTTGCAGCCCGAACTGCCACTGTTGGCTCGACGATGGCCCAACCGAGGAGAGCGGGGCAGCCGCGGGGAGCGAGCGGGGCTGCCCTCGATGTGGCCGACGGCGCGTGCGCTGCCATACATCTCCCAAGGTTCCCAAGAGCCTGGTGTCCGTAAGAAAAGCCCCTCACAGATTGACAAGGGTGTTTAGTGCATCCTAGAAAGGAGAACAGAAGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500013 False 2336 lncRNA 0.42 7 9704707 9717614
TU500012 True 1675 TUCP 0.53 5 9712849 9737144

Neighbor

gene id symbol gene type direction distance location
CI01000306_09674684_09680504 CRELD1 coding upstream 24034 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 32941 9655395 ~ 9671766 (+)
CI01000306_09625036_09626067 NA coding upstream 77766 9624960 ~ 9626941 (+)
CI01000306_09559074_09602026 NA coding upstream 102461 9558978 ~ 9602246 (+)
CI01000306_09548430_09553502 WNK2 coding upstream 151205 9548430 ~ 9553502 (+)
CI01000306_09851578_09857742 HP1BP3 coding downstream 133613 9851227 ~ 9858552 (+)
CI01000306_09860935_09865155 SH2D5 coding downstream 143321 9860480 ~ 9865724 (+)
CI01000306_09866302_09875270 KIF17 coding downstream 148688 9866302 ~ 9875717 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 174044 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 204456 9922070 ~ 9936407 (+)
G435589 NA non-coding upstream 6382 9697429 ~ 9698325 (+)
G435540 NA non-coding upstream 101311 9602427 ~ 9603396 (+)
G435554 NA non-coding upstream 224614 9436545 ~ 9480093 (+)
CI01000306_09296908_09305617 NA non-coding upstream 398540 9296809 ~ 9306977 (+)
CI01000306_09263755_09288503 NA non-coding upstream 416145 9263589 ~ 9289035 (+)
G435609 NA non-coding downstream 28220 9745834 ~ 9748829 (+)
G435637 NA non-coding downstream 160026 9877640 ~ 9877881 (+)
G435639 NA non-coding downstream 161050 9878664 ~ 9884919 (+)
G435660 NA non-coding downstream 179380 9896994 ~ 9897394 (+)
CI01000306_09225597_09230504 NA other upstream 478201 9225512 ~ 9231333 (+)
G434545 NA other upstream 2584848 7119317 ~ 7119859 (+)
G433724 NA other upstream 3574929 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 3596532 6106143 ~ 6108175 (+)
G436932 NA other downstream 1365374 11082988 ~ 11098376 (+)
G437030 NA other downstream 1552144 11269758 ~ 11271160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location