G435639


Basic Information

Item Value
gene id G435639
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9878664 ~ 9884919 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500077
TGTGTGTTCAGTGGTTAAACATTGTTATAATTTATTGCTGCTTTCTGTGTGCATTATGGTGTGGATTCAGTTAGAGATACCACAGTGAAAGGGCAACTGTTAACTGAGTCAATACAAACAGAAGGAACCATTCTCAGTGTAAGTCATGAACCAGGTCACATTCCGAGATAAAGAACTTTAATGACAGATGAATCTGAGAGGGCAGGTAACATGAACACCAGCCTGTTGGTTGCAACCCAAGATAATGCACTAATTCACCAAAGTGCTGTGTCAGATCTCACTGACCGGCGTGTAAAATGAGGAGTTTGACTGATAGCTGATCTTTGGGAGACGGGGTTCCTCGGGTTCAAGAGTCTCTGGTGCAGAAGACATACTCCATTGTATTTGAAAAAAAAAACTGATTTGTTATTCATACAGACAGATTTGGAGCATGCTTTCAATAGCAAGATCAAAGAGTAATTCAAGGCTAATCTACTTACAGCCAGTTCAAAATTAAATATACTTAATTTCACCTGGAAAAGTAAACATACTGTTTCATCTTAATCTTCAATGCTGAATAAGCAAAGGCATCTGGGTGTAAAGGTGCGATCACATTTACCATTGCTCTGCAAAATTTCGCAGGCGAAATTTAATTATTTCAATAAGAATCCATGCGATTGGGAGTTGGTGAAAAAGTTCCCCACACAGATTTCGCTTGTGTTCAAGTTCGCCGAGTTCACCAAAAGAAAGCTGCTTGGTTTGGAAGTGACTTCTTTCTTCTGTGCTTCATACATTGAACACTATTAGCAATAGACCTTTTTTGCCCACGAGATCTCACCGAAATTTCGCTAACATGACCGCACCTTTCGTCACTATTTAGATTCAGTAAATAATCAACTAAAAGTAAAGTACCACACTGTTTTACTTTGAATTGCTAAAAAGTGAAGAGTGCAATTTCTGCGCCACTAGTGCTACCAAACGGAATTTCAAAAATAATGACCATTGGTCTGTCAAACGCCAAAACTCACGAAATTTGTTGAGCTGATGTTGCTTTGTTGGCCGGAATGTTCAAACAAACAGATCAATGTTTTGAAAGCACCTGTCACACATGAGATCGCAATAGCAAACCACAAAGATCTAATCAATTCTCAATGGACAAAATCAAATCCTGCCCAACATTTATTCTTGTTTGAGAAGCAGTTTCACTCACAATAAAGAAGAAAAGACTATCGCAAACTTCCGTTTTAAGCTGTCTTTAAAAACCGCAGAGCATACAGTCGACAAATCTCAGTTTTTCAGCAATCCTAGCTTTCGTAATGCCTCTCTCCGATCCCTTCCGATGCTGGGAACTGGCACGTTGAAGCCTTTGGATTGAGATGATGTTACATGTAACGCCACTTTTCTGGGTGTCGATTCATTAGCATCCATTTGAAAGTCTTTACTGTGGTTCTTGGTCCCTGCTGCAGAAGAACACGACTTTTGGTTCTGAGAAACTGCATTTATAACTGTGTTGTTAGAACCTGACAGTCCCATCCCAGTGAGTTCCAGTGTGGCAGATTTCCCGGTTAAAGTCATATCGGCATGTTGCGGTGATGAAGAAGCTGTGGAAAGATTGCTCACGGACCTCTGGTGGATAGAATTGCAACTTTGTATTGGCTGGTTTATTTGTCCTCCAGATCTTGCAGGGATACTTGGAGCAAGACGTTGACTTGTGATCTGGTTTTGCTCCAAGTTTGCTGGGGATTGAGAATGCTTTACTTGTTGACAGACTGGGTTCTGTGTATCCTCCTTGAGGAGACCCAACTTGCAAAGAGCCTCCACTCTTACTTTCTCTGGCTTCATTAATTTATCTACAGTCAATACCCCAGAGTGAGGCATGGTCGAGTCAATCTTAGGGTTGGAGGCTCCTTCCTGGTTCACTGGGACTTTGTGTGGTGTTTTCATTTTAGGTTTAGGGGCCACAGGTGGAGGAGTGGGCTTGGAGCCCATACTGGTCACAGCCTGTGAGTTCTGGGTAAGAGCTTGGGATCCAGTGTTGTTTCCCACAAGATCATTATTTGTAGAAACCTGCTGTTCTTGGGTTTTGGCTTCAGTTGCATTGGTTTTCCGCATCGATGCACTCTTGCTCACATGCACCAGAGCCTCATACGAAAGGGGTCCTCGACTCGCCACATTCTCTGGCCGCTCATTATTCTGATGTTCTTCCGCTGTATCTTTACTGCCTTTGACTTTATGCGGAGGTGGTATCACAACCACATTGACCTCTGAGGGAACTCGTGGAGCTTCTTGATGGAGCTGAGCATTTTTTGAAGCCACTTTAGGTGCTGTTTTTTTCTGGGATGCAGCTAACCCAGGTCTGGTTTGAATTTGCGAGTTACGGTGCGCAAGGACAAATGGAGTAGGGACCATATAATTCAGAATTTCATTTTGCACCAAGCTGCTAGATGACAACGGACCTTCAAATTGACTTGCCACGTGTCACGTATCGGCATTGCAAAGGATGGAAACCTCCTCTCTGATATCAATTCAGTTCTTTAAAAGTGTTGATGAAACTGCATTTCCCCTAAAAGTAGAATTTGAAAAATGCAAACTGAGTGTCTTGATAGGCACCCTTTGCAAGAGTTGGTAGTATTAGTAATGATAGTGGAAAATGTAGAGCAATTAAAAACAATCATATACCAAAAAGGTCATGAATTTGAAAGAGCTGGCAAACATATCTATATTTCTGTGTACAGTATAAGAAATGATCAGATCATGCTGAGTGTAGTTGGATCAATTCCGGCATGAATGGAAGACTATGAATCATCGGTTTGTTTAAAGATAAAGATAAAAAAAAACATTCAGCTCATTATGTTTAATTCTTTAATATTTAGTCCTACAGAAATGGTTTCATTTAATCCAGTTTCCAATTTCATCTCATAAAAAATCAGCAAGAAAAATGTCAGTACACTTTGCTTTATTAGTTGTCAGGTAAAA
>TU500075
TCGACAAATCTCAGTTTTTCAGCAATCCTAGCTTTCGTAATGCCTCTCTCCGATCCCTTCCGATGCTGGGAACTGGCACGTTGAAGCCTTTGGATTGAGATGATGTTACATGTAACGCCACTTTTCTGGGTGTCGATTCATTAGCATCCATTTGAAAGTCTTTACTGTGGTTCTTGGTCCCTGCTGCAGAAGAACACGACTTTTGGTTCTGAGAAACTGCATTTATAACTGTGTTGTTAGAACCTGACAGTCCCATCCCAGTGAGTTCCAGTGTGGCAGATTTCCCGGTTAAAGTCATATCGGCATGTTGCGGTGATGAAGAAGCTGTGGAAAGATTGCTCACGGACCTCTGGTGGATAGAATTGCAACTTTGTATTGGCTGGTTTATTTGTCCTCCAGATCTTGCAGGGATACTTGGAGCAAGACGTTGACTTGTGATCTGGTTTTGCTCCAAGTTTGCTGGGGATTGAGAATGCTTTACTTGTTGACAGACTGGGTTCTGTGTATCCTCCTTGAGGAGACCCAACTTGCAAAGAGCCTCCACTCTTACTTTCTCTGGCTTCATTAATTTATCTACAGTCAATACCCCAGAGTGAGGCATGGTCGAGTCAATCTTAGGGTTGGAGGCTCCTTCCTGGTTCACTGGGACTTTGTGTGGTGTTTTCATTTTAGGTTTAGGGGCCACAGGTGGAGGAGTGGGCTTGGAGCCCATACTGGTCACAGCCTGTGAGTTCTGGGTAAGAGCTTGGGATCCAGTGTTGTTTCCCACAAGATCATTATTTGTAGAAACCTGCTGTTCTTGGGTTTTGGCTTCAGTTGCATTGGTTTTCCGCATCGATGCACTCTTGCTCACATGCACCAGAGCCTCATACGAAAGGGGTCCTCGACTCGCCACATTCTCTGGCCGCTCATTATTCTGATGTTCTTCCGCTGTATCTTTACTGCCTTTGACTTTATGCGGAGGTGGTATCACAACCACATTGACCTCTGAGGGAACTCGTGGAGCTTCTTGATGGAGCTGAGCATTTTTTGAAGCCACTTTAGGTGCTGTTTTTTTCTGGGATGCAGCTAACCCAGGTCTGGTTTGAATTTGCGAGTTACGGTGCGCAAGGACAAATGGAGTAGGGACCATATAATTCAGAATTTCATTTTGCACCAAGCTGCTAGATGACAACGGACCTTCAAATTGACTTTTGGGCACATCTACAATCAAGAAATGTATTTTAGTGTATAACCAGAAATAATTAGGAGTTAGAAATACTAAAAGAGCTAAAACGCACCTTGACTAGGGACCTTGTTGATTCCAGAGAGGTGGGCCGCTTTGTTAGCCACATTTCCTAGAGCAGGCAGCTGATCAGACTCGTCATTGGACAGGCCACTGTCGTCATCCATATCCAGTGACTGAATGGTCTCCTCTAGGTACATGAGACAAGCCCTCTCCTCAGCGGAGAGATACTCCAGACTTTCATCACTAAGCATGAGTTGAAGCTGACCACGCTGTCACAGCTGCCATTACTGTCAATCTCACCCACTGTGTCAAGGCCATTGCCATCTTGCCACGTGTCACGTATCGGCATTGCAAAGGATGGAAACCTCCTCTCTGATATCAATTCAGTTCTTTAAAAGTGTTGATGAAACTGCATTTCCCCTAAAAGTAGAATTTGAAAAATGCAAACTGAGTGTCTTGATAGGCACCCTTTGCAAGAGTTGGTAGTATTAGTAATGATAGTGGAAAATGTAGAGCAATTAAAAACAATCATATACCAAAAAGGTCATGAATTTGAAAGAGCTGGCAAACATATCTATATTTCTGTGTACAGTATAAGAAATGATCAGATCATGCTGAGTGTAGTTGGATCAATTCCGGCATGAATGGAAGACTATGAATCATCGGTTTGTTTAAAGATAAAGATAAAAAAAAACATTCAGCTCATTATGTTTAATTCTTTAATATTTAGTCCTACAGAAATGGTTTCATTTAATCCAGTTTCCAATTTCATCTCATAAAAAATCAGCAAGAAAAATGTCAGTACACTTTGCTTTATTAGTTGTCAGGTAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500077 False 2955 lncRNA 0.41 2 9878664 9884919
TU500075 True 2061 TUCP 0.43 2 9879920 9884919

Neighbor

gene id symbol gene type direction distance location
CI01000306_09866302_09875270 KIF17 coding upstream 2947 9866302 ~ 9875717 (+)
CI01000306_09860935_09865155 SH2D5 coding upstream 13410 9860480 ~ 9865724 (+)
CI01000306_09851578_09857742 HP1BP3 coding upstream 20112 9851227 ~ 9858552 (+)
CI01000306_09674684_09680504 CRELD1 coding upstream 197991 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 206898 9655395 ~ 9671766 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 6739 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 37151 9922070 ~ 9936407 (+)
CI01000306_09971328_09977478 NA coding downstream 86409 9971328 ~ 9977752 (+)
CI01000306_10078014_10104625 NA coding downstream 192637 10077556 ~ 10105147 (+)
CI01000306_10109047_10115899 NA coding downstream 222716 10107635 ~ 10116072 (+)
G435637 NA non-coding upstream 783 9877640 ~ 9877881 (+)
G435609 NA non-coding upstream 129835 9745834 ~ 9748829 (+)
G435590 NA non-coding upstream 161050 9704707 ~ 9737144 (+)
G435589 NA non-coding upstream 180339 9697429 ~ 9698325 (+)
G435660 NA non-coding downstream 12075 9896994 ~ 9897394 (+)
G435661 NA non-coding downstream 12941 9897860 ~ 9898223 (+)
G435663 NA non-coding downstream 19030 9903949 ~ 9904587 (+)
G435664 NA non-coding downstream 19939 9904858 ~ 9905113 (+)
G435678 NA non-coding downstream 128616 10013535 ~ 10013776 (+)
CI01000306_09263755_09288503 NA other upstream 593335 9263589 ~ 9289035 (+)
CI01000306_09225597_09230504 NA other upstream 652158 9225512 ~ 9231333 (+)
G434545 NA other upstream 2758805 7119317 ~ 7119859 (+)
G436932 NA other downstream 1198069 11082988 ~ 11098376 (+)
G437030 NA other downstream 1384839 11269758 ~ 11271160 (+)

Expression


Co-expression Network