G435660


Basic Information

Item Value
gene id G435660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9896994 ~ 9897394 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500099
CATTTTTTTTAAGCCCTTATTTCCTTTTCGTCAATAGTTCGTTCTCTAGGTGATGTGGCCACTGTGGTTTTCCGGTCATACTCTTCCATGCACACTTCTACACTTAATGACACACAGTTTCCTTATATTATGCAAATCCCATCCTACACTAAGAACCAGCACTTCCTTCCTCTCATCCCAGGCAAAAAAACAAAACAAATAGACAGTCCATTTCTGCCATGACCATCAGGCTATGGGAAACCAACCCAAGACTTTTCAGGCAGGTCAACCCTTGCTGGGTTTAGCCGTCGGAAACACTGCCCAGGTCAGATTGCCATCCGGGAGCTCCCGAGGGGCCTTCCTGTTCCTGCGGGTGTGATTGTTGTGAGCGTGTCCTTTGTTCTCCCTCCCCCCCGACCCGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU500099 True 401 lncRNA 0.49 1 9896994 9897394

Neighbor

gene id symbol gene type direction distance location
CI01000306_09891658_09893015 SNRPE coding upstream 3838 9891532 ~ 9893239 (+)
CI01000306_09866302_09875270 KIF17 coding upstream 21277 9866302 ~ 9875717 (+)
CI01000306_09860935_09865155 SH2D5 coding upstream 31740 9860480 ~ 9865724 (+)
CI01000306_09851578_09857742 HP1BP3 coding upstream 38442 9851227 ~ 9858552 (+)
CI01000306_09674684_09680504 CRELD1 coding upstream 216321 9672775 ~ 9680673 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 24676 9922070 ~ 9936407 (+)
CI01000306_09971328_09977478 NA coding downstream 73934 9971328 ~ 9977752 (+)
CI01000306_10078014_10104625 NA coding downstream 180162 10077556 ~ 10105147 (+)
CI01000306_10109047_10115899 NA coding downstream 210241 10107635 ~ 10116072 (+)
CI01000306_10190981_10191175 NA coding downstream 293587 10190981 ~ 10191195 (+)
G435639 NA non-coding upstream 12075 9878664 ~ 9884919 (+)
G435637 NA non-coding upstream 19113 9877640 ~ 9877881 (+)
G435609 NA non-coding upstream 148165 9745834 ~ 9748829 (+)
G435590 NA non-coding upstream 179380 9704707 ~ 9737144 (+)
G435661 NA non-coding downstream 466 9897860 ~ 9898223 (+)
G435663 NA non-coding downstream 6555 9903949 ~ 9904587 (+)
G435664 NA non-coding downstream 7464 9904858 ~ 9905113 (+)
G435678 NA non-coding downstream 116141 10013535 ~ 10013776 (+)
G435681 NA non-coding downstream 124934 10022328 ~ 10025387 (+)
CI01000306_09263755_09288503 NA other upstream 611665 9263589 ~ 9289035 (+)
G436932 NA other downstream 1185594 11082988 ~ 11098376 (+)
G437030 NA other downstream 1372364 11269758 ~ 11271160 (+)

Expression


Co-expression Network