Gene
RNA
| Item | Value |
|---|---|
| gene id | G435767 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 10283638 ~ 10286492 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU500216 | True | 2487 | lncRNA | 0.35 | 2 | 10283638 | 10286492 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_10241081_10252745 | MFSD4A | coding | upstream | 30774 | 10241081 ~ 10252864 (+) |
| CI01000306_10194611_10226157 | CDK18 | coding | upstream | 57472 | 10194238 ~ 10226166 (+) |
| CI01000306_10190981_10191175 | NA | coding | upstream | 92443 | 10190981 ~ 10191195 (+) |
| CI01000306_10109047_10115899 | NA | coding | upstream | 167566 | 10107635 ~ 10116072 (+) |
| CI01000306_10078014_10104625 | NA | coding | upstream | 178491 | 10077556 ~ 10105147 (+) |
| CI01000306_10304503_10316470 | NA | coding | downstream | 17753 | 10304245 ~ 10316678 (+) |
| CI01000306_10332743_10335743 | NA | coding | downstream | 46169 | 10332661 ~ 10335849 (+) |
| CI01000306_10347562_10355420 | NA | coding | downstream | 59859 | 10346351 ~ 10355457 (+) |
| CI01000306_10429251_10466444 | EPHA8 | coding | downstream | 142759 | 10429251 ~ 10466851 (+) |
| CI01000306_10548464_10549530 | C21H1ORF50, CLG25H1ORF50, CUNH1ORF50 | coding | downstream | 261972 | 10548464 ~ 10549627 (+) |
| G435764 | NA | non-coding | upstream | 22546 | 10256921 ~ 10261092 (+) |
| G435753 | NA | non-coding | upstream | 144460 | 10138919 ~ 10139178 (+) |
| G435750 | NA | non-coding | upstream | 148335 | 10134983 ~ 10135303 (+) |
| G435702 | NA | non-coding | upstream | 152758 | 10053714 ~ 10130880 (+) |
| G435746 | NA | non-coding | upstream | 158387 | 10122964 ~ 10125251 (+) |
| G435878 | NA | non-coding | downstream | 226258 | 10512750 ~ 10527209 (+) |
| G435889 | NA | non-coding | downstream | 320372 | 10606864 ~ 10607159 (+) |
| G436913 | NA | non-coding | downstream | 390873 | 10677365 ~ 10677606 (+) |
| G436973 | NA | non-coding | downstream | 443636 | 10730128 ~ 10730492 (+) |
| CI01000306_10738169_10739341 | SVBP | non-coding | downstream | 450834 | 10738169 ~ 10741047 (+) |
| CI01000306_09891658_09893015 | SNRPE | other | upstream | 390399 | 9891532 ~ 9893239 (+) |
| G435639 | NA | other | upstream | 398719 | 9878664 ~ 9884919 (+) |
| CI01000306_09860935_09865155 | SH2D5 | other | upstream | 420449 | 9860480 ~ 9865724 (+) |
| G435590 | NA | other | upstream | 546494 | 9704707 ~ 9737144 (+) |
| CI01000306_09263755_09288503 | NA | other | upstream | 998309 | 9263589 ~ 9289035 (+) |
| G436932 | NA | other | downstream | 796496 | 11082988 ~ 11098376 (+) |
| G437030 | NA | other | downstream | 983266 | 11269758 ~ 11271160 (+) |
