G436975


Basic Information

Item Value
gene id G436975
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10737326 ~ 10737522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU501552
TTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGGTTAGGGTTACATTACGATGTTACTACTCATATTTTTGTATTATTGTAAACCATATGATAATCACTTCTTTCAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGT
>TU501553
TTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGGTTAGGGTTACATTACGATGTTACTACTCATATTTTTGTATTATTGTAAACCATATGATAATCACTTCTTTCAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGTTTTTGTTTAAAATTTGGTTATTAAAAATCTTATCTTAAAGAAAAAAAAAAAATTAAATGATTTTCTTCTCTGAGCCTTATTTTCCTGCATCCCACAGTCTATTCGCTGATAGAGGGGCTTTTGTCAAATAAGACAGAAGTCAAATAAGACCCTCTTGAGTTTTTCAGTGCAAAACATGTTACATTCTGACCTGATGTTAGATAATTTTGGGCTTTTCACACTGCACTTAACCCCAGATAATCATCGGGTTACACTTTATTTTAAGGTGTCCTTGTTACAGTGTAATTATACAATTAAGTACAGAGTAATAATAAACTACACATCTACTTCCTATATAATTAGGGTTAAGGTTTGTATTATGGTTAGTTGCATATAACTATGCATAATTGACTGTTATTACTATAGTAACTACATGTAAAAGGTGTAACAGGGACACTGTAAAATAAAGTGTTACCGATCATCATTCTAAACCCTGCTTGTAACTCTGGGTAAAGGAATGTTTCACACTTGTAATTTAAAAGTGGGGTGGGCACCGCTTTTTATGCTGGGAAAACCAGGTTTTGAAGCGTACATTGTGAAACGTCAGTTTATGAATACCCAGGATTAATTGTTGTATAGTATGAGCATTGTGAAATGTGCATAAAGATAACCCAGTAGCCCGTTTACCCAGGGTTTAGAATGACCCAGGGTTAACTATTTCAAGTGTAGAGCCAATGGGTGGAGCTTGATGTCTAGCTCCCCCTCACTGGAAATAATGGGTGGAGCTAGACGGTCCAACCACACCCTAACCCTATTACTAAATGTAACACCACCCATTAGGTCCACAGAGGTGGCAGTGGAGTAGGCCAAGCTCCACCCATTATGTCCAGAGAGGGGGAGATAGACATCATTTGGAGTGAGCAGTAGCACATTGCCACTTTGAGTTCCTTTAGACACGCCCCTCTCCCTCTTCTCCAATCAGACCTTATAATAATAATTATAACAAGCAGGTGTAAACATATGTACACCAGTAAATACACTACTGTTCAAGTTTGTGGTCAGTACGTTTTTGTTTTTTTTTTCAAAAGAGATTATTACTTTTATTCAGTAATAATGCATTAAATTGACCAGAAGTGACAGTAAAGGTATTTATGATGTTACAAAAGATTTCTATTTTAAATAAATGCTGTTTTTAAAGG
>TU501554
TTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGGTTAGGGTTACATTACGATGTTACTACTCATATTTTTGTATTATTGTAAACCATATGATAATCACTTCTTTCAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGTTTTTGTTTAAAATTTGGTTATTAAAAATCTTATCTTAAAGAAAAAAAAAAAATTAAATGATTTTCTTCTCTGAGCCTTATTTTCCTGCATCCCACAGTCTATTCGCTGATAGAGGGGCTTTTGTCAAATAAGACAGAAGTCAAATAAGACCCTCTTGAGTTTTTCAGTGCAAAACATGTTACATTCTGACCTGATGTTAGATAATTT
>TU501555
TTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGT
>TU501556
ATAAAATAAAATAAAATAAAACACACATTTGTGTAATTGTACGTTTAAATAAAAACCTTTGAGCCCCTTGAACGAAACGTTAATAGGAACCTTGTAGCTGCTTCATTTTCTAACCGAGTTTATTTATCAGTGACGCCAAACTTGCTAAACCAAACTAGCCTCATCTTTGTTGAATTGTTTTCGTTAGAAATCATAAGATTGTGTCCATCCGTTTTTAAAATGGAGCCAGCATGTCGAAAAGACAAACAGAAACAGCAAACACCGACCCGTGGAGACAGAACGAAACAGAAATCAGCCCAGCAGGAGCTGAAGCAGAGACAGAGAGCAGAGATTTACGCCCTGAACAAAGTCATGACTGAACTTGAACAGCAGCAGTTCGAGGCCTTCTGCAAGCAGATGCAGTCACAAGCAGAATGAGAGAAACTCATGTCAGGGCAAACATTCACAGGTTAGGGTTACATTACGATGTTACTACTCATATTTTTGTATTATTGTAAACCATATGATAATCACTTCTTTCAGCCCCCGTCATTTAAACCTAAATGCACCCGCTGGAGAATGCATGGCTGTATTGGTGCACAAACACAGTACTTGAATCTGAGTGTACAATCACATCGCAAACATTGGGTAGTATGTACAAAACCAAAAATATCATAATTTTTATCAGAGAACCACCCTGTGAAAAGACATTCACTTACTCTGTAGGATGTTAAACATCTGTTCAGTTTCATTTTCATTGTTAATTGTAATGTTTTATATGACATGCAATGTTTATTGTCCGGAACGAGTATTACATTATATATGATTGTACAAATCTATTTTTTGACAATTTGCAACCTCTTGACTGAACTGAAAATAAGATACAGTTGTCTCTCTTTTAGTTTATCATTAATTTATTTGTGACATACGATAATAATGGTTTATGTTCCTTTTACCACAAGCAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU501552 False 74 lncRNA 0.37 1 10737449 10737522
TU501553 False 74 lncRNA 0.37 1 10737449 10737522
TU501554 False 74 lncRNA 0.36 1 10737449 10737522
TU501555 True 74 lncRNA 0.38 1 10737449 10737522
TU501556 True 197 lncRNA 0.36 1 10737326 10737522

Expression


Co-expression Network