XLOC_012846 (spon1a)


Basic Information

Item Value
gene id XLOC_012846
gene name spon1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 28564640 ~ 28880191 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025629
agTCCAGGATGGCAACATAGAGCGGTGAAGGCGGTGATATCAGCATCTGCGTATATGGGAGCCTGTTATTCCATGCAAGTTTAGTTTAGACTAGAGTTCAACACTCTAGACACACGCTTATAAGTGCACAttgaaaagaaattgaaaaaaaaatgaaagtaaagcGATCGGAGAtgtggagagccggtgtcctgctgcTGTTCACTGGCTGCGTATGCGCGAGTGTGCCGGAGGAACCAGCGGACAGAACGTCTCCATCTGACGGCTACTGCAGCTGGATAACGCGGGCACAGCCGCACGGAGCTGGAGGCAGAAGAGAGAGCACCAGTGAATTCAGGCTGCGAGTGGAAGGAGACCCGGAGCATTATCAGCCGGGCAGCACTTACCGAGTAACCCTGTATGCAACAAACCCTGCATACTTCAGAGGCTTTACACTTATCGCACTGAAGGAAGGGCACAATGGTGACCAAGAGGAGGATTATGCTGGAAATTTCCAGATAATCGATGAGGAAGACACGCAATTCATGACAAGCTGCCCACCCGCAGTGACAGAAAGCACTCCACGCAGGAGGACCAGGATACAAGTGTTCTGGACGGCACCCCCATCAGGTCATGGCTGTGTACTGCTAAAGGCTAGTATTGTTCAGAGGAAGATCATCTCATTCCAGGATGAGGGCTCACTCACGAAGCGGATGTGTGAGAAAGAATCGCTGTATGGAGAAACCACAGACAAACCCCTGCTGGACTGCTGCGCCTGTGGAACTGCCAAATACAGAGTCACCTTCTACGGCAACTGGTCAGAGAAATTGCACCCAAAAGACTACCCAAGGAGAGCCAATCACTGGTCAGCCCTCATTGGAGCTTCTCATTCGAAGAACTATATATTGTGGGAGTATGGAGGCTATGCTAGTGAAGGGGTGAAGCAGGTTGCTGAACTGGGCTCACCTGTCAAGATGGAAGAAGAGATCCGTCAGAAGGGTGATGAGGTCTTGACTGTTATAAAAATGAAAGCACAATGGCCGGCGTGGCAACCCCTCAATGTTCGAGCAGCTCCATCAGCCGAGTTCTCAGTGGACCGCACACGTCACCTGATGTCCTTTTTAACCATGCTTGGTCCCAGTCCTGACTGGAATGTGGGTCTGTCATCCGAAGACCTCTGCACCAGAGAGTGTGGCTGGGTCCAGAAGGTGGTTCAGGACCTCATCCCATGGGACGCAGGAACAGACAGCGGGGTCTCTTATGAGTCTCCCAACAAGTCTACAGCACCCCAGGAGAAAATCCGTCCCCTCACGAGTTTAGATCATCCACAAAGCCCTTTCTATGACCCGGAGGGTGGCGCAATTACTCCCGTGGCCAGGCTTGTTGTGGAGAGAATTGCCCgaaagGGTGAGCAGTGCAACATTGTGCCTGATAATGTGGACGACATTGTGGCTGACATTGCCCAGGAGGAAAAAGAAGAAGATGACACTCCAGAGACGTGTATCTACTCCAACTGGTCTCCATGGTCTGCATGTAGCTCCTCGACATGTGAGAAGGGGAAGAGGATGAGGCAGAGGATGCTGAAGGCGCAGCTGGATCTCAGTGTGCCCTGTCCACATACACAAGACTTTGAGCCCTGCATGGGGCCCGGCTGCAGTGATGAAGATTCTTCCACATGCATGATGTCAGAATGGATCACGTGGTCCCCATGCAGTGTTTCGTGTGGCTCAGGCTTGCGTTCAAGAGAGCGATATGTAAAGCAATTTCCTGATGATGGCTTTGCTTGCACTCACCCCACTGAAGAGACAGAACCCTGCACTGTAAATGAGGAATGTTCTCCGAGCAGCTGTCTGGTTACAGAATGGGGTGAATGGGATGCATGCAGCGCCACCTGTGGGCTTGGCATGAAAAGACGAGAGCGAATGGTGAAAATGCCTCCATCTGATGGCTCCATTTGTGGGGCTGAAGTGGTGGAAGTGGAGAAGTGTATGATGCCAGAATGCCATACAATCCCGTGTTTACTGTCCCCGTGGTCAGACTGGAGTGATTGCAGTGTAACGTGTGGTAAAGGCACACGGGTACGTCAGCGGATGCTTAAATCAGCAGTGGAGTTGGGAGAATGCAATGAGGATCTGGAGCAGATGGAGAAATGCATGTTGCCAGAATGTCCAATGGACTGTATAATGTCAGAGTGGTCTGAATGGTCCGAGTGCAGCAAGTCCTGTGGAAAGGGTCACTTGCTCCGTACACGCATGATCACTCTGGAGCCTCAGTTTGGAGGAGATCCATGCCCTGAGGTCACACAAAGAAAAACGTGCAAGATAAAGAAGTGTAATCAAGGGGCTGGAAACAACGATGAGAGGAAGAGACGCAAAGAAGACCGCAAGAAGAGGAGGAACAAACAGGCAGGAGAAGAAACTGCAGATGAGCTTGCAGGATGCAAAATGAAGTCGTGGTCTGGATGGACTGACTGTACCAAGTTATGCGGGGGAGGCATCCAGGAGCGGCTCATGACGGCCAAGAAGAGATTTAAGAACGCACAACTAACAAGCTGTAAAGACCGAAAGGAGATTCGTGCCTGCAATGTCCATCCCTGCTAGGGCTGTACTGCATGGGCTTGATGGACGCGACCCAATCTAAATTATGAACAGACTATGACGCACTGTTTTGCAGTAATTTAAAGCACTATGTCCGGTGGTTGGAAAGCTGCAACAGCTAgtctgttatttttacttttattttatagaaTTTATAGTGACCCAGGCCTGTAAATGGGTGGGAAAGGAAGGGGGAAGATGCTTAGAGTTGCAATGTGCTGTACAAATTCAGATGTATTAATATGCATTAATATTTGAGAATAACAGCCCTTTGAAAAGCTTTGAAGAGGGGAGTTACTTTTGAAGATTGATTTTTCACAAGCAGGACCGTGGCATATTAAACATTAATGTGTTTTGACAGGAAATGCAAAACAAATTTCTCCTTTTATACTCTGTgatccaaacaaacacacacacacacacattctgaaaCTATAATTTCCTCAAAAGGAATGACATTTGCAAAAGCAAGGTCACAAGAGTCAAAGACTTCAAAGACTtatctactttctttttttatttaagacatgAACAGgtcagagaaaacaaaac

Function

symbol description
spon1a Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in central nervous system; eye; and hypochord. Orthologous to human SPON1 (spondin 1).

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0031012 extracellular matrix cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-000427-9 Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Is expressed in central nervous system; eye; and hypochord. Orthologous to human SPON1 (spondin 1).

Ensembl:

ensembl_id ENSDARG00000010029

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025629 True 3128 mRNA 0.49 16 28564640 28880191

Neighbor

gene id symbol gene type direction distance location
XLOC_012845 CR769777.2 coding upstream 260323 28303891 ~ 28304317 (+)
XLOC_012844 kiaa1549lb coding upstream 408384 28102620 ~ 28156256 (+)
XLOC_012843 hipk3b coding upstream 570843 27904515 ~ 27993797 (+)
XLOC_012842 si:ch211-222m18.4 coding upstream 741853 27821856 ~ 27822787 (+)
XLOC_012840 tspan18b coding upstream 751476 27732285 ~ 27813164 (+)
XLOC_012847 syt9a coding downstream 108182 28988373 ~ 29060842 (+)
XLOC_012848 ppfibp2a coding downstream 265490 29145681 ~ 29193708 (+)
XLOC_012849 CT025546.2 coding downstream 294902 29175093 ~ 29175208 (+)
XLOC_012850 mafa coding downstream 522432 29402623 ~ 29413756 (+)
XLOC_012851 cenpn coding downstream 1018764 29898955 ~ 29906010 (+)
XLOC_012841 BX649600.1 non-coding upstream 827800 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 1368314 27196210 ~ 27196326 (+)
XLOC_012832 NA non-coding upstream 1566051 26997576 ~ 26998589 (+)
XLOC_012828 AL935332.1 non-coding upstream 1816713 26747811 ~ 26747927 (+)
XLOC_012854 NA non-coding downstream 1249580 30129771 ~ 30131831 (+)
XLOC_012863 NA non-coding downstream 2193052 31073243 ~ 31075619 (+)
XLOC_012865 NA non-coding downstream 2400659 31280850 ~ 31459487 (+)
XLOC_012866 NA non-coding downstream 2639387 31519578 ~ 31521691 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location