Fish Transcriptome and Expression Database

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model fish

XLOC_012849 (CT025546.2)

Basic Information

Item	Value
gene id	XLOC_012849
gene name	CT025546.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	29175093 ~ 29175208 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025637
atcaacaGCCATATCATCCTGTAGCCCAAGACcgattactcactgaagctaagcagggctcagcctggtcagtgcctggatgggagaccacatgggaaaactaagtggtgttagag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000108141

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00025637	True	116	rRNA	0.51	1	29175093	29175208

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012847	syt9a	coding	upstream	114251	28988373 ~ 29060842 (+)
XLOC_012846	spon1a	coding	upstream	294902	28564640 ~ 28880191 (+)
XLOC_012845	CR769777.2	coding	upstream	870776	28303891 ~ 28304317 (+)
XLOC_012844	kiaa1549lb	coding	upstream	1018837	28102620 ~ 28156256 (+)
XLOC_012843	hipk3b	coding	upstream	1181296	27904515 ~ 27993797 (+)
XLOC_012850	mafa	coding	downstream	227415	29402623 ~ 29413756 (+)
XLOC_012851	cenpn	coding	downstream	723747	29898955 ~ 29906010 (+)
XLOC_012852	atmin	coding	downstream	775025	29950233 ~ 29955391 (+)
XLOC_012853	si:ch211-220f16.1	coding	downstream	852927	30028135 ~ 30030949 (+)
XLOC_012854	NA	coding	downstream	954563	30129771 ~ 30131831 (+)
XLOC_012841	BX649600.1	non-coding	upstream	1438253	27736724 ~ 27736840 (+)
XLOC_012835	BX640463.2	non-coding	upstream	1978767	27196210 ~ 27196326 (+)
XLOC_012832	NA	non-coding	upstream	2176504	26997576 ~ 26998589 (+)
XLOC_012828	AL935332.1	non-coding	upstream	2427166	26747811 ~ 26747927 (+)
XLOC_012863	NA	non-coding	downstream	1898035	31073243 ~ 31075619 (+)
XLOC_012865	NA	non-coding	downstream	2105642	31280850 ~ 31459487 (+)
XLOC_012866	NA	non-coding	downstream	2344370	31519578 ~ 31521691 (+)
XLOC_012868	BX908763.1	non-coding	downstream	2670296	31845504 ~ 31846556 (+)

Expression

Co-expression Network