XLOC_012851 (cenpn)


Basic Information

Item Value
gene id XLOC_012851
gene name cenpn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29898955 ~ 29906010 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025640
tgacttttattttatttttaacagaagCTTCCGGGTTAACTCTTGATTTCTGGCGGTTTGTTTTGAATGTCTACAACATTTAGCGAATATTTTTGTACACGATGGACGAACAGGCCAGATCTGTTTTAAATCGGGTAATTCGCAGAATAccgaacaaaaatataaaaaatcttctTAGTAAATGGAATTGTTTGTCAGCAGACCAGCTGCAAGCTTTGGATTACACGAAACCTAAACGGATGATAGTTGAACATATAATCGACTGCTGCGAGAGCAGCAACCTTAACCTGAAACACATCACAAATTTGGAAATGATCTATCATTTAGACAACCCTGATCAAGGCACTTGGTATGCTTGTCAGCTTACTGATGCACAGGATGATGCAGTTTGTGTAGAGCTGACCCAGTTTAAAGAACAATTTAAAGCACACTTGCATGGGGTCATTCGGCATaTTTCCATTAAAATGAAGAAACACGAGGACGATGCTATATGGATTCGGATTGCCTGGGGAGACAATTTTAGCAAACCCAACCACCTTAAACCAACATATGTTGTTCACCACCTGCACACTTCCTACGTGTTTATTTCAAACCTCATGGCCAAACACAAAATCTTCTTATGTCAGGCACTAGTAGTAGCCACAAGACATGGCTCTATAAAAGATGGCCATCTGAGTACCAGGAGCCTCACTGCAATGAGGGACTTGCTTCTGAGACGTTATCAACAGgTTTTTCCAAGTGCTCAGTCAAAGATACAACAGGAAAGAGACAGTCCTCCGTTGCATCCCTGTATTGGAAAGGAACACAGTGACTATGAAGAGATGAGACATCAGATGGCATGTGAGGCATTTGGACATGGACCTACCCCAAAGTTAGAAACAGCAGTATATAAACTTGAGACGAGGTACAGAGGAAATGGCAACCTAACGGTCAGTGACAGAGAGGAGTTCTTCAGAGGAGTAGTCAGGTTCTCCAGCAGCAGTCTGCTAGAGTCCTTACGCAACTGTGTCGCCTCAGGTATGGCTGAAGGTCCAGTCACTCCACTGCTGTCTGCTATCACTCGGAGAGGAAGGAATTCTTTTGTTATCACAGACAAAGGCCCTGGTGTTTCCAGCCAAGCATCAGCACCAAGAGCCTGATGACGCTTGTACTGCAGAGAATGATCAGTTAAAGGAGATGGACATGATCATGTATTGAGCAGCCTGAGTTATCTGAAACAGCTGGAATGATCTATGAACCAGCAAGGATAACCTTTTTTTACAATTAACCACATAAATGCAGCATGGATTATTTTTAAAGTGTCATTATTGcttgattttaaataaacattttaaaatgaaaaaaatatatatataaacagttctTTCTAAAACTTAATTTTGTAATGATAATTTTctcatttaacacagtaaagaatacattttagttACCCTTTAGAAtatggttgtattagttaatgcatttactaacagaaACACAACTAAACACATttgctacagtatttgttcatgttaatgaaaacacagttgttcattgttattgATATTACTAGCATTAACAAGCATGAAgttgaatgttaataatgtataAAGAAATGttgaacaatgattaataaatgctagaAGTATCGTTCATAGTTAGTTCATGTTGGTGAATACATcaactaaaaaaaatcttattctaAAGTGTGACCACACTGTGCATATTGTGCATGGTTAAATTGTGCATAATTAGGTTAATTGCCTCATCGTGTAATTATATAGATTAAATATCTATGCACTTGAGAGCCCATTATGAATGTTTTGTAC

Function

symbol description
cenpn Predicted to act upstream of or within chromosome segregation and kinetochore assembly. Is expressed in myotome and somite. Orthologous to human CENPN (centromere protein N).

GO:

id name namespace
GO:0007059 chromosome segregation biological_process
GO:0051382 kinetochore assembly biological_process

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-030616-408 Predicted to act upstream of or within chromosome segregation and kinetochore assembly. Is expressed in myotome and somite. Orthologous to human CENPN (centromere protein N).

Ensembl:

ensembl_id ENSDARG00000043640

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025640 True 1808 mRNA 0.38 10 29898955 29906010

Neighbor

gene id symbol gene type direction distance location
XLOC_012850 mafa coding upstream 485199 29402623 ~ 29413756 (+)
XLOC_012848 ppfibp2a coding upstream 705247 29145681 ~ 29193708 (+)
XLOC_012849 CT025546.2 coding upstream 723747 29175093 ~ 29175208 (+)
XLOC_012847 syt9a coding upstream 838113 28988373 ~ 29060842 (+)
XLOC_012846 spon1a coding upstream 1018764 28564640 ~ 28880191 (+)
XLOC_012852 atmin coding downstream 44223 29950233 ~ 29955391 (+)
XLOC_012853 si:ch211-220f16.1 coding downstream 122125 30028135 ~ 30030949 (+)
XLOC_012854 NA coding downstream 223761 30129771 ~ 30131831 (+)
XLOC_012855 gse1 coding downstream 251024 30157034 ~ 30480827 (+)
XLOC_012856 cox4i1 coding downstream 601829 30507839 ~ 30510241 (+)
XLOC_012845 CR769777.2 non-coding upstream 1594638 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 2162115 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 2702629 27196210 ~ 27196326 (+)
XLOC_012832 NA non-coding upstream 2900366 26997576 ~ 26998589 (+)
XLOC_012863 NA non-coding downstream 1167233 31073243 ~ 31075619 (+)
XLOC_012865 NA non-coding downstream 1374840 31280850 ~ 31459487 (+)
XLOC_012866 NA non-coding downstream 1613568 31519578 ~ 31521691 (+)
XLOC_012868 BX908763.1 non-coding downstream 1939494 31845504 ~ 31846556 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_09420414_09428472 CENPN coding CI01000028 null 9419436 ~ 9428829 (+)