XLOC_012852 (atmin)


Basic Information

Item Value
gene id XLOC_012852
gene name atmin
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 29950233 ~ 29955391 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025641
ATGGCTGCTGCGACAGTCAATAATAATAGCCGTCACAAAAGACAAAAATGCAGCGAGAAGCTACCTTTACAAGACAGAGAGATTATTAAACCCTCCATAACAGAGCTCACCAAAGAAGTGCGGACCAACATCCTCTGCACGGTGGAAGGATGTGGGAAGATTCTGCCCAACACTCCAGCACTCAACATGCATCTGGTCAAGTCTCACAGAGTCCAGGGTCTGGTTAACCCTACGATTAGAAAGGGCGATAAGAATTCGCAAAAGCTGTACTGTTGCCCAATTGAAGGATGCCCAAGAGGACCGAACAGACCCTTTTCTCAGTTTTCGCTTGTTAAGCAGCATTTTATGAAGATGCATGCGGAAAAGAAGCACAAGTGTTTAAAGTGCAGTAATGGCTACAGCACCGAGTGGGACCTGCGGAGACATGTGGAGGATTGTGGGAGGACATACAGCTGCACATGTGGTTGTCCTTATGCCAGTAGAGCAGCACTGCTGTCTCATATCTACAGAACTGGTCACGAGGTTCCCAAGGAGCACAGgtatccaccagtaaaaaagaggaaaatgGAAAGGTTGTCAAGTGGGGCAACAAGTTTTTTGCTCGATGAACAAATTGATGACATGCCTGACTCTAAGAAAAAGCTTACTGAAGGAACAGCTACTACCATACTAGTCTCTGAAGCCCCAGACGCAGCACAATACAACACTAACCAACCTAGACACATCCAGAAGCTTCTTCTCCCAAAGCCCAAAGTGGCCCTAGTGAATGTTCCTGTTATGCAGTTTGCCCACCTGCCTGTTCTCCTCCCCTCCACAGAAAGTAGTGCCTTGAGGTCATTGGTCTTGTCTTTGGATGCACAAGGGTCCGTAAGCACTGTGCATATTTTGTCACCATCAATCGGCACAATGGTGCCTGATCTGAACAATAAAACTTTCAAAGAGACCTTTCCTGTTTCTACATTGGGCCCAGAAACTATCAGCACAGGAGTACAGGTCAATCTTGAGAGTCAAGCCTCTGTGGAAGATCCGCTGATTGATCATGGAATCAAAAGCAAAAGCACTTCAACAAACATTCAGACTGATATAACATACCTCAACAAAGAGATGGGTACTGGACCAGAGACTGTTTCCCTCAATGAGGCCTCAGTGTCCTCTTGCTCACAGACAGACATAAGTGTAAGTGCTCAAATTCAGCTGCCTATTAGTGTACAAACCCAAACGCTACCCTCACGAATCAAAGCCACGTTTTCAATTGGGGCACAAACAGATTTTTTCAGTTTCTCTTCCTTTAATGTGACCCGAGAAACACAAACAAGCTGCTCTGTAGCCCCATTGAATGAAAGCCAGATGGACCAAGCAATGTGCACAAATCTTTTTGACCCTGATACACTCAGTGTCTCCACTCAGACTGCAACTGTTGATGCTCCTTTCAGAACCAGTGGTTTAGAAGGTCCTCTCACCTGCACTGGAGCTGAGCTTTTTGAGGACAAATCTTCTGCATCTATGTGTTTTGGGGCACAGACTGACCAAAACACAGTTGCAGACAACCAGACTCAGACCATGATACTCTTCCGTGACCTTGAGAATATACTCTCTGACAGCATGTCTGGGGCAACTTCGAGCTGTGCTTCAGGTTTAGTTGCTGGGCATGAATCACAAAACACAGGTATAGACTTTGACTTCGAGGAGTTCCTTAATGCAACCCACATTCAAACTCAGACAGAAGAAAGTGGCCTGAATACTCTGAACACAGAGACGACTTTGGAGCTCCTGGACATCGAGACACAGACTGACTTCCTGCTCTTTGATAACCTTGGTAATGGGCACAACAGTGATGTTGGAACAAGGGTGCAACCAAATGATCTAGAGCTTGAGATGTTTGACACGCAGACCCAGACAGATCTCAACTTCTTGCTCGAGACAAGTGGACACATGCCCCTTGGCAGTATCCTTCGACAGTCTAGTTTCAGCATGAGCACTGAATCCTCGGACACAGAAACACAGACCGACATCAGGCCCGCTCCACTTTCTCTGCCTTGCTCTCATGATGGTCAGGTTAGGCTCAGCAGTGCTGAAACCCAGACCATTTCCAGTTCTTTTCACAGCCTGGGTCACCTTTTCCACACTAGCAATGAGACCCAGACAGCAGTGGATGACTTTCTTTCAGCAGACTTGGCCTGGAACATGGAGTCTCACTTTAGCTCGGTGGAAACCCAAACGTGTGAGGAGCTCCTCTCACTGTTTCGACACACTGAAAAAGTCAAAGACTGA

Function

symbol description
atmin Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor).

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030616-220 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and transcription cis-regulatory region binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ATMIN (ATM interactor).

Ensembl:

ensembl_id ENSDARG00000068601

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025641 True 2271 mRNA 0.47 4 29950233 29955391

Neighbor

gene id symbol gene type direction distance location
XLOC_012851 cenpn coding upstream 44223 29898955 ~ 29906010 (+)
XLOC_012850 mafa coding upstream 536477 29402623 ~ 29413756 (+)
XLOC_012848 ppfibp2a coding upstream 756525 29145681 ~ 29193708 (+)
XLOC_012849 CT025546.2 coding upstream 775025 29175093 ~ 29175208 (+)
XLOC_012847 syt9a coding upstream 889391 28988373 ~ 29060842 (+)
XLOC_012853 si:ch211-220f16.1 coding downstream 72744 30028135 ~ 30030949 (+)
XLOC_012854 NA coding downstream 174380 30129771 ~ 30131831 (+)
XLOC_012855 gse1 coding downstream 201643 30157034 ~ 30480827 (+)
XLOC_012856 cox4i1 coding downstream 552448 30507839 ~ 30510241 (+)
XLOC_012857 dusp22a coding downstream 555839 30511230 ~ 30564688 (+)
XLOC_012845 CR769777.2 non-coding upstream 1645916 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 2213393 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 2753907 27196210 ~ 27196326 (+)
XLOC_012832 NA non-coding upstream 2951644 26997576 ~ 26998589 (+)
XLOC_012863 NA non-coding downstream 1117852 31073243 ~ 31075619 (+)
XLOC_012865 NA non-coding downstream 1325459 31280850 ~ 31459487 (+)
XLOC_012866 NA non-coding downstream 1564187 31519578 ~ 31521691 (+)
XLOC_012868 BX908763.1 non-coding downstream 1890113 31845504 ~ 31846556 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_09438121_09447264 ATMIN coding CI01000028 null 9437945 ~ 9447469 (+)