XLOC_012854


Basic Information

Item Value
gene id XLOC_012854
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30129771 ~ 30131831 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025646
CTGTTCTGACGTTCTTCTCGACGCCGAAGGAGGATGGACTTGAAGGTCTCAAAGAAGCTGGAATACGCTCATGAAGACGAAACACAGACATTTGCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTAGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCATATCCAGTGAAATAAGtcaTGATGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTTTACAAAAAAGCAggtggcgcagtgggtagcatgatcgcctcaaatcatgaaggttgctggttcgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttctctccatgttggcgtgggtttcctctgggtgctccggtttcaaagacatgcggtacaggtccaaagacatgcggtacaggtgaattgg
>TCONS_00025647
GAAGGAGGATGGACTTGAAGGTCTCAAAGAAGCTGGAATACGCTCATGAAGACGAAACACAGACATTTGCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTAGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCATATCCAGTGAAATAAGtcaTGATGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTTTACAAAAAAGCAAGAGAATAGAAGTTTGCTGATGATCTAACAGggtgtcacggtggcgcagtgggtagcatgatcgcctcaaatcatgaaggttgctggttcgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttctctccatgttggcgtgggtttcctctgggtgctccggtttcaaagacatgcggtacaggtccaaagacatgcggtacaggtgaattgg
>TCONS_00025648
GGAGGATGGACTTGAAGGTCTCAAAGAAGCTGGAATACGCTCATGAAGACGAAACACAGACATTTGCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGT
>TCONS_00025649
GGAGGATGGACTTGAAGGTCTCAAAGAAGCTGGAATACGCTCATGAAGACGAAACACAGACATTTGCAGAAAATGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTAGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCATATCCAGTGAAATAAGtcaTGATGAACCTGACTGAATGCATTCATCAACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTTTACAAAAAAGCAAGAGAATAGAAGTTTGCTGATGATCTAACAGGTATTAACATAAAGtgggtagcatgatcgcctcaaatcatgaaggttgctggttcgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttctctccatgttggcgtgggtttcctctgggtgctccggtttcaaagacatgcggtacaggtccaaagacatgcggtacaggtgaattgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000095204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025646 False 533 lncRNA 0.47 5 30129771 30131831
TCONS_00025647 False 547 lncRNA 0.46 5 30129796 30131831
TCONS_00025648 False 109 processed_transcript 0.44 2 30129799 30130552
TCONS_00025649 True 540 processed_transcript 0.44 5 30129799 30131831

Neighbor

gene id symbol gene type direction distance location
XLOC_012853 si:ch211-220f16.1 coding upstream 98822 30028135 ~ 30030949 (+)
XLOC_012852 atmin coding upstream 174380 29950233 ~ 29955391 (+)
XLOC_012851 cenpn coding upstream 223761 29898955 ~ 29906010 (+)
XLOC_012850 mafa coding upstream 716015 29402623 ~ 29413756 (+)
XLOC_012848 ppfibp2a coding upstream 936063 29145681 ~ 29193708 (+)
XLOC_012855 gse1 coding downstream 25203 30157034 ~ 30480827 (+)
XLOC_012856 cox4i1 coding downstream 376008 30507839 ~ 30510241 (+)
XLOC_012857 dusp22a coding downstream 379399 30511230 ~ 30564688 (+)
XLOC_012858 irf8 coding downstream 436114 30567945 ~ 30573849 (+)
XLOC_012859 foxf1 coding downstream 715406 30847237 ~ 30850365 (+)
XLOC_012849 CT025546.2 non-coding upstream 954563 29175093 ~ 29175208 (+)
XLOC_012845 CR769777.2 non-coding upstream 1825454 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 2392931 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 2933445 27196210 ~ 27196326 (+)
XLOC_012832 NA non-coding upstream 3131182 26997576 ~ 26998589 (+)
XLOC_012863 NA non-coding downstream 941412 31073243 ~ 31075619 (+)
XLOC_012865 NA non-coding downstream 1149019 31280850 ~ 31459487 (+)
XLOC_012866 NA non-coding downstream 1387747 31519578 ~ 31521691 (+)
XLOC_012868 BX908763.1 non-coding downstream 1713673 31845504 ~ 31846556 (+)
XLOC_012869 NA non-coding downstream 1740190 31872021 ~ 31872676 (+)

Expression


Co-expression Network