CI01000308_00012346_00036304 (CLCA5.2)


Basic Information

Item Value
gene id CI01000308_00012346_00036304
gene name CLCA5.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 11975 ~ 36413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_00012346_00036304.mRNA
ATTACATTGAAGCACACACCCTCTTCTCTCTGATCAGACCCCTAAGATCATTTGTAACATTGTTCAAAACAGGGTTTCGGGAGTTGCTGTTCATCTAAACTCTACAGCTATGGACTCAAGAACGGTGTTTGTCTTATTATGGATGTTACTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGGCGTCACCATTGCAATCAGTTCAAGAGTACCACAGGATAACACGCTCATTGATAAAATCAAGGACATGGTCACTAAAGGGTCGTTTCATCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGCAACGATATTAGTTCCACCCCACTGGAATAGTAAGGAATTTACCAAAGCAAGAGCAGAGTCCTATGAAAAGGCAAAAATAAGAATTGATAATGCTAATCCAGCATATAGTGATGAACCTTACACTCATCAGTATGTTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGAGACGACAAACTCATTAAGACTTATGGGTCAAGAGGAAAGGTCTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAATACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTAAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCACTTCGACCGTGCCACACTGATCCACAAACTTTACTACCAACTAAGGGAATCCTTCGACTACAGCAGGCTGCCTCACATTTCCTGCTAAACAACATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTACTAATGCTTATACTCTGAGCCCCTTGACAAAACTGTATGCATCTGAGAAACTCATCAAATTGTTGCCAAAAGTAGCAGCGGGAGTGACATACATATGTAAAGGCCTCAATCTAGGTTTACAGGTACTCAAAAAAGACAACGGGGATGTGATAGGGGATGAAATCATTTTTCTGACAGATGGTGAAGCGACTGACAACATTACTAGTTGTGTTCCCTCTGCAACTGAAAGTGGCACCATTATACACACAATAGCTTTGGGTGATAAAGCAGATAAAGCACTGAGGGAAATGGCTGACAAAACTGCTATGGACTCAAGAAAAGTGTTTGTCTTATTATGGATGTTGCTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGATGTTACCATTGCAATCAGTTCAAAAGTACCACAGGATAACACGCTCATTGATAAAATCAAGGACATGGTCACTAAAGGGTCGTTTCATCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGTAACGATATTAGTTCCACCCAACTGGAATAGTAAGGAATTTACCAAAGCAAGAACAGAGTCCTATGAAAAGGCAAAAATAATAATTGATAATGCTAATCCAGCATATGGTGATGAACCTTACACTCTTCAATATGGTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGGAACGACAAACTCATTAAGACTTATGGGTCAAGAGGGAAGGTTTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAACACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTGAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCACGTCAACCGTGCCACACTGATCCACAAACTTTACTACCAACTAACGGGTGCAAGTTTTATCCTAACAAATATCAAAACACAGACAGCTCTATAATGTTCCTACCAAGTCTGGATTCTGTGAGCACATTTTGTCGTGAAAACGAGCACAATTATGAAGCCCCAAACTTGCAAAACAAAAAATGTGGCAAAGCAACACGGACTGTGATATTTGAGGATTCTGTTGATAAAGACGCACTTCGTTCTCTGAAACCACTGCTGTCCTCTCCACCAGCGCCATCTTTCACAGTTGTGCAGCGATTGCATCGGGTTGTTTGTCTCGTCCTTGATGTCTCAGGAAGCATGAAAGGCCCCAGAATCCTTCGACTACAGCAGGCTTCCACACATTTCCTGCAGAACATCATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTACTAATGCTTATACTCTGAGCCCCTTGACTACTATTGATGATTCCACACGAGAGAAACTCGTCAAATTGTTGCCAAAAGTAGCAGAGGGATGGACATACATATGTAAAGGCCTCAATCTAGGTTTACAGGTACTCAAAAAGGACAACGGGGATGTGATAGGGGATGAAATCATTTTTCTGACAGATGGTGAAGCAACAGACAATATTAATAGTTGTGTCCCAGCTGCAATTAAAAGTGGCGCCATTATACACACAATAGCTTTGGGTGATAAAGCAGATAAAGCACTGAGGGAAATGGCTGACAAAACTGGAGTTGCTGTTCTTCAGATCTCTACAGCTATGGACTCAAGAACGGTGTTGGTCTTATTATGGATGTTGCTGTTGTCCACCTCCACTGGAATCAAACTAGATGGAAATGGTTATGTTGATGTTACCATTGCAATCAGTTCAAGAGTACCACAGGATAACACCCTCATTGATAAAATCAAGGACATGGTCACTGAAGGGTCGTTTCGTCTTCATCAAGCATTGGATAAAAAGGTCTATTTCAAAGAAGCAACGATATTAGTTCCACCCCACTGGAATAGTAAGGAATTTACCAAAGCAAGAGCAGAGTCCTATGAAAAGGCAAAAATAATAATTGATGACGCTAATCGAGCATATGGTGATGAACCTTACACTCATCAGTATGGTGAATGTGGAGCTGAGGCTCAGTACATTCATTTCACCCCAAACTTCCTCCGAGACGACAAACTCATTAAGACTTATGGGTCAAGAGGAAAGGTCTTGGTTCATGAATGGGCTCATCTGAGATGGGGCGTGTATGATGAATACAGTGAAACAAAACCATTCTACTACTCTAATGGCCGTATTGAAGCTACAAGGTGTAGCAAAAACATTGAAGGTCAGTTTTATGATGAATCAAATCGACCGTGCTACACTGATCCACAAACTTTACTGCCAACTAAGGGGTGCAAGTTTTATCCTAACAAATATCAAAACACAGACAGCTCTATAATGTTCCTACCAAGTCTGGATTCTGTGATCACATTTTGTCATGAAAACGAGCACAATTATGAAGCCCCAAACTTGCAAAACAAAAAATGTGGCAAAGCAACATGGACTGTGATATTTGAGGATTCTGTTGATAAAGACGCACTTCGTTCTCTGAAACCACTGCTGTCCTCTCCACCAGCGCCATCTTTCAAAGTTGTGCAGCGAATGCATCGGGTTGTTTGTCTCGTCCTTGATGTCTCAGGAAGCATGAAAGACTCCAGAATCCTTCGACTACAGCAGGCTTCCACACATTTCCTGCAGAACATCATTGAGGATCAAGCCAGTGTTGGAATTGTAACCTTTAGTTCCGGTGCTTCTACTCTGAGCCCCTTGACTACTATTGATGATTCCACACGAGAGAAACTCGTCAAATTGTTGCCAAAAGTAGCAGATGGAGGGACATTCATATGTAAAGGCCTCAATCTAGGCTTAGAGGTACTCAAAAAGGACAATGGGGATGTGATAGGGGATGAAATCATTTTTCTCACAGATGGTGAAGCATCGGACGATATTAATAGTTGTGTCCCAGCTGCAATTAAAAGTGGCGCCATTATACACACAATAGCTTTGGGTGATAAAGCAGATGAAGCACTGAGGAAAATGGCTGCCAAAACTGGGGGGAAATTTATCACAGCCAGTGATGACATTCTCTCTAATCAGCTACTGAATGGATTTTCTTCACTTACAATACCAACAGGAGATCAAACAAAAGACCCAGTTCAGATAGACAGTGTGGGAATAAAAACATCAGACTGGTTCAATGGGACAATATTAGTGGATCAGACCATTGGTACCAAAACCAGCTTTACAATAACCTATGAAAAAAGTTTACCTGACATTTCCATACATTCACCAAGTGGCTCAACCTACAAACAAGTACAGATGCGTCATGATAAAGCAGCAAAAACAGTCACTTTTAAAGTTCCAGGAACTGCAGAGCCTGGGGACTGGAAGTACAGTATCCAAACTACAATAAGTCAGTCTCTGACTATAACAGCAACGAGTCAAGCGGCGCGTGCTGATGTTCCTCCTATCGTTCTCAAAGCCCGCATGAACCAGCAGTTCAGTGACGGCACTAAACCCATGATAGTGTTTGCTGAGGTCAGTCAGAATTACAAGCCTGTAATAAAGGCTGAAGTGTGGGCTACGCTGGAGTCCGAATCTGGGTCCGCACAAGAATTACAACTTCTGGACAATGGAGCAGGTGTGGTGGAGCTGAACCCTCCAAAGCCTCCAGTTTCTGAGGAATCACTCGAGGTTGGAAGATTTACAAGGACAGCCACTGGAGAGAGTTTTGAGGTGGCTTTTACAGGCTCAACCCCACCAAATTTCCCTCCTAACAGAATCACAGATCTGAGTGCTGAGATCCAGGAGGACTCTGTGCTTCTCAACTGGACGGCTCCTGGTGAGGACCTCGACCAAGGGACAGCTAAATCCTATGAGCTCAGGTGGAGCTTTGACCTTAAAGTGCTTCAATTCAACTTCAGCAATGCTCACGTATTCAACACAACTGCTATCTCACCGCAGGAGGCTGGATCAGTTGAACAGCATTCATTCAATCCTAATATCACTATACAAAATGGCACCACAATCTTTTTTGCTGTTCAGTCTGTGGACAAAGAAAATGTAAAATCTGAAATCTCCAACATTGCTCAAGCTTCAAAGATGCTCCCTGGTCCAAAACCACACACATGCCAGAAATAGACCTGAAGTTGATGTTCATTGCAATTTCTGTTTGTCTGGCAACTGTGGTGATTGTTGGTATTATTGCGATAACAACATGGGCGTTGAGTCGAAGAAAACTTTCTGGTTTTTAGATTACCACCAACATTAATATCTGATGCAAAGAAAATCTTTCTGTTGTACAATTACTGCGCTGCATTTTCTTTAGTTGTACACCATATGCTTGGCAAAAATATAAAATGCAAAATACAGTTTGGTAAATTGTTTAGATTTGTTTATATTGGAAATGTTTGGCATATAATTAAACTCTCTCAGATGATGACTGCTGTTCAGTTCTTGTTTTTGTTTTTTGCTTTAGCTATTGTTGTGTACCCTGAATATAATCAAATAAA

Function

GO:

id name namespace
GO:1902476 chloride transmembrane transport biological_process

KEGG:

id description
K05030 CLCA3_4; calcium-activated chloride channel regulator 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_00012346_00036304.mRNA True 5286 mRNA 0.41 28 11975 36413

Neighbor

gene id symbol gene type direction distance location
CI01000308_00003475_00004723 NA coding downstream 7148 3297 ~ 4827 (-)
CI01000308_00041387_00048067 NA coding upstream 4934 41347 ~ 48253 (-)
CI01000308_00110535_00111604 NA coding upstream 73188 109601 ~ 111658 (-)
CI01000308_00474123_00482394 NA coding upstream 437651 474064 ~ 483464 (-)
CI01000308_00529728_00530015 NA coding upstream 493205 529618 ~ 530145 (-)
CI01000308_00711286_00720426 NA coding upstream 674803 711216 ~ 720712 (-)
G437593 NA non-coding upstream 12320 48733 ~ 48981 (-)
G437594 NA non-coding upstream 12821 49234 ~ 49462 (-)
G437620 NA non-coding upstream 75415 111828 ~ 112172 (-)
G437622 NA non-coding upstream 77912 114325 ~ 114628 (-)
G437625 NA non-coding upstream 83538 119951 ~ 120204 (-)
G437635 NA other upstream 98895 135308 ~ 135685 (-)
G438434 NA other upstream 911143 947556 ~ 957849 (-)
G438671 NA other upstream 1741182 1777595 ~ 1782581 (-)

Expression


Co-expression Network