Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_012856 |
| gene name | cox4i1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 30507839 ~ 30510241 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| cox4i1 | Predicted to enable cytochrome-c oxidase activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including adaxial cell; brain; digestive system; eye; and muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1). |
| id | name | namespace |
|---|---|---|
| GO:0006123 | mitochondrial electron transport, cytochrome c to oxygen | biological_process |
| GO:0001666 | response to hypoxia | biological_process |
| GO:0005751 | mitochondrial respiratory chain complex IV | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004129 | cytochrome-c oxidase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-5175 | Predicted to enable cytochrome-c oxidase activity. Acts upstream of or within response to hypoxia. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be part of mitochondrial respiratory chain complex IV. Is expressed in several structures, including adaxial cell; brain; digestive system; eye; and muscle. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to several human genes including COX4I1 (cytochrome c oxidase subunit 4I1). |
| ensembl_id | ENSDARG00000032970 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00025656 | False | 709 | mRNA | 0.44 | 5 | 30507839 | 30510241 |
| TCONS_00025657 | True | 512 | mRNA | 0.46 | 4 | 30508729 | 30510078 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_012855 | gse1 | coding | upstream | 27012 | 30157034 ~ 30480827 (+) |
| XLOC_012854 | NA | coding | upstream | 376008 | 30129771 ~ 30131831 (+) |
| XLOC_012853 | si:ch211-220f16.1 | coding | upstream | 476890 | 30028135 ~ 30030949 (+) |
| XLOC_012852 | atmin | coding | upstream | 552448 | 29950233 ~ 29955391 (+) |
| XLOC_012851 | cenpn | coding | upstream | 601829 | 29898955 ~ 29906010 (+) |
| XLOC_012857 | dusp22a | coding | downstream | 989 | 30511230 ~ 30564688 (+) |
| XLOC_012858 | irf8 | coding | downstream | 57704 | 30567945 ~ 30573849 (+) |
| XLOC_012859 | foxf1 | coding | downstream | 336996 | 30847237 ~ 30850365 (+) |
| XLOC_012860 | mthfsd | coding | downstream | 367955 | 30878196 ~ 30952282 (+) |
| XLOC_012861 | cd151l | coding | downstream | 488231 | 30998472 ~ 31023447 (+) |
| XLOC_012849 | CT025546.2 | non-coding | upstream | 1332631 | 29175093 ~ 29175208 (+) |
| XLOC_012845 | CR769777.2 | non-coding | upstream | 2203522 | 28303891 ~ 28304317 (+) |
| XLOC_012841 | BX649600.1 | non-coding | upstream | 2770999 | 27736724 ~ 27736840 (+) |
| XLOC_012835 | BX640463.2 | non-coding | upstream | 3311513 | 27196210 ~ 27196326 (+) |
| XLOC_012863 | NA | non-coding | downstream | 563002 | 31073243 ~ 31075619 (+) |
| XLOC_012865 | NA | non-coding | downstream | 770609 | 31280850 ~ 31459487 (+) |
| XLOC_012866 | NA | non-coding | downstream | 1009337 | 31519578 ~ 31521691 (+) |
| XLOC_012868 | BX908763.1 | non-coding | downstream | 1335263 | 31845504 ~ 31846556 (+) |
| XLOC_012869 | NA | non-coding | downstream | 1361780 | 31872021 ~ 31872676 (+) |
