CI01000308_00836074_00942387 (DSCAML1)


Basic Information

Item Value
gene id CI01000308_00836074_00942387
gene name DSCAML1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 836074 ~ 942387 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_00836074_00942387.mRNA
ATGACGGTCCCGCGGAGGGGAGGGTACGAGAGGCGGGACCAAAGTCTTCCCCGCTTCTCGGCGCTGACGAGTACGGGACTAGGGCTGGAGAGATCGCCGGGGAGCATCGTCACCACTCCTGCACGGAGCCTCGCCTGGCCGAATACTGCACAGTGCACACGTCGGGATTGCAAAACATTCCTGAGAAATATACCTGCTATTTATGGCATGTGGCTGGTAACTTTACTCCTGCTGTATTCTTTTCAAGAAGTGCACAGCGAGGATGTGGTCTCGACGCGGCTGTACTTTGTGAATGCTTCCCTGCAGAGAGTGACCTTCTCCAGCTCAGTGGGGGTGTCCCTGCCCTGTCCTGCGGGTGGCGCCCCCCATGCCGTCCTCCGCTGGTACCTGGCCACTGGCGACGACATCTACGACGTGCCACACATCCGCCACGTTCACGCCAACGGCACGCTGCAGCTCTACCCCTTCTCCCCCTCTGCCTTCAACAGCTTCATTCATGATAATGACTACTTCTGCACTGCCGAGAACCAGGCCGGCAAGATCCGCAGCCCTAGCATCCGTGTCAAAGCAGTGTTCAGGGAACCTTACACGGTTCGCGTGGCGGACCAAAGGTCCATGCGGGGCAACGTGGCCGTCTTCAAGTGCCTCATCCCCTCTGCTGTGCAGGAGTACGTCAGTGTGGTGTCCTGGGAGAAGGACACGGTCTCCATCATCCCAGGTAACAGGTTTTTCCTGACATCATATGGGGCCCTCTACATATCTGACGTTCAGAAAGAGGATGCCCTCTCTACCTACCGCTGCATCACCAAGCACAAATACAGCGGAGAAACCAGGCAGAGTAATGGGGCTCGTCTCTCTGTGCTGGACCCCACTGAATCCCCGCCTTCTGTGATGGACAGTTTCCAGTCAGGAGAGGTACAAGTGGGGCGCAGCATAGAGTTGCCCTGCATCGCCTCCGGTTACCCCAACCCCACCATCCGCTGGCTGAAGGATGGGAGGCCGCTTCCTGCTGACTCCCGCTGGACGCGGCGACTGACCGGCCTCACAATCAGCGATCTCCGCCTGGAAGACTCCGGAAACTACATCTGTGAAGTCACCAACAGCTTTGGCTCCAAAGAGGTCACAGGACACCTTAATGTCATCGAGCCTCTGAGAGTCACATTATCCCCCAAGAACCTGAAAACAGGCATCAGCAGCACAGTGATTCTGTCCTGTGCTGTTCAGGGTTCGCCCCACTTCACCGTCTCCTGGTTCCGCAACACAGAACCCATTGTGCCTGACCAGCACTTCTCCATCCAGGGAGCCCACAACGAGACACTCTTCATCACGGCAGCCCAGAAAAGACACTCAGGGGCATATCAGTGCTTTGCCACCCGCAAGGGTCAGACCGCACAGGACTTCTCCATCATACTGCTTGAGGACGGCACCCCACGGATCGTCTCGTCTTTCAGTGAGCGCGTGGTAGCCCCTGGCGAGCCCTTCTCTCTCATGTGTGCGGCCAAAGGCGCCCCTCCCCCCACCATCACCTGGACGCTGGACGACGAGCCGGTAGCGCGGGACTCGGCGCACCGGGCCAGCCAGTACACGCTCTCCGACGGCTCCACTGTCTCGCACGTCAATGTCACCAACCCCCAGATCCGCGATGGGGGCGTGTACCGCTGCGCCGCACGCAACTCGGCCGGTAGCGCCGAGTACCAAGCGCGCATAAACGTAAGAGGTCCTCCCAGTATCCGGGCCATGCGGAACATCACAGCCGTGGCCGGTCGCAACACTTTCATCAACTGTCGTGTGATTGGTTACCCCTATTACTCCATCAAGTGGTATAAAGACGGGGTGCCGTTGCCAGACAACCATCGTCAGGTGGTGTACGAGAACGGGACTCTGAAGTTGAGTGATGTGCAGAAGGGCATGGATGAGGGGGCGTACCAGTGCAGTGTGCTCATCCAACCCCAGCTCTCCATCAGCCAGACTGTCTACGTCACAGTCAAAGTTCCTCCCCTCATCCAGCCCTTTGACTTTCCTCCCACCTCCATTGGTAAGCTGATGTACATAGCGTGTGTGGTGTCCTCCGGAGACATGCCAATCCGGATCACCTGGAGGAAGGACGGGCAGGAGATTGTATCGGGAACATCGGGAGTCACCATCGAAACCAAGGAGTTCATGAGCTCGCTTCAGATCTCCGAAGTTTCGCTCAAGCACAATGGAAACTACACCTGTATCGCAAGCAACAACGCAGCAACTGTCAGTTCGGAGAGACAGCTCATTGTGACAGTTCCACCTGGTTTTCGGGTTCAGCCCAATAACCAGGATGGGATCTATGGCAAGTCAGAGGTTCTGAACTGCTCTGTGGAAGGGTACCCTCCTCCCAAAGTTGTCTGGAAGCATGCCAAAGGTATAGGGAACCCCCAGCAGTACCACCCAGTTCCACTAACGGGTCGCATTCAGATCCTGTCCAACGGTTCTCTGCTGATCCGCCATGTTCTAGAGGAAGACCGGGGATACTACCTGTGCCAGGCCAGCAACGGAGTGGGTTCCGACATCAGCAAGAGCATGATGCTCACCGTTAAAATTCCGGCTATGATCACATCCCACCCAAACACCACCATGGCCATAAAGGGGCAGAACAAGGAGTTAAACTGCACAGCCCGGGGTGAGTACCCCATCATCATCCGCTGGGAGCGAGGCGACACCGTTATTGACCCCGACCGCAACCCTCGGTACTCCATCACCACCAGCCCCAATGAGAAAAGCGATGAAGTTATCTCCACACTGAAGCTGAAGCCAGCGGAGCGCGGGGATTCCGTCTTTTTCTCCTGCCATGCCATCAACTCATACGGCGAGGGCCGAGGGCTCATCCAGCTGACGTCTATTTCCACTTGTTTGGTT

Function

symbol description
dscaml1 Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and central nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in brain; ciliary marginal zone; retinal ganglion cell layer; and retinal inner nuclear layer. Used to study ocular motility disease and ocular motor apraxia, Cogan type.

GO:

id name namespace
GO:0048704 embryonic skeletal system morphogenesis biological_process

KEGG:

id description
K06768 DSCAML1; Down syndrome cell adhesion molecule-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_00836074_00942387.mRNA True 2886 mRNA 0.57 14 836074 942387

Neighbor

gene id symbol gene type direction distance location
CI01000308_00770560_00784179 NA coding upstream 50278 770272 ~ 785796 (+)
CI01000308_00695140_00699646 SCN4B, SCN4BA coding upstream 136173 695140 ~ 699901 (+)
CI01000308_00657092_00659557 SCN2B coding upstream 175586 656991 ~ 660488 (+)
CI01000308_00640975_00648455 NA coding upstream 186933 640908 ~ 649141 (+)
CI01000308_00435833_00465809 NA coding upstream 370028 435553 ~ 466046 (+)
CI01000308_00983925_00991307 NA coding downstream 41538 983925 ~ 991389 (+)
CI01000308_01003736_01006059 NA coding downstream 61349 1003736 ~ 1007117 (+)
CI01000308_01132580_01134190 FKRP coding downstream 189638 1132025 ~ 1134414 (+)
CI01000308_01594565_01626825 CADM2, CADM2B coding downstream 652178 1594565 ~ 1626825 (+)
CI01000308_01645574_01648364 CADM2 coding downstream 703146 1644246 ~ 1648567 (+)
G437941 NA non-coding upstream 3921 831892 ~ 832153 (+)
G437939 NA non-coding upstream 12924 822724 ~ 823150 (+)
G437938 NA non-coding upstream 13413 822389 ~ 822661 (+)
G437917 NA non-coding upstream 14471 785964 ~ 821603 (+)
G437929 NA non-coding upstream 39188 796462 ~ 796886 (+)
G437854 NA non-coding downstream 104059 1046446 ~ 1048498 (+)
G437952 NA non-coding downstream 112228 1054615 ~ 1058043 (+)
G437985 NA non-coding downstream 142949 1085336 ~ 1087243 (+)
G437837 NA non-coding downstream 168371 1110758 ~ 1114271 (+)
G437843 NA non-coding downstream 195199 1137586 ~ 1167949 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009053 dscaml1 coding NC_007126.7 CM002899.2 12071037 ~ 12229874 (-)