CI01000308_01132580_01134190 (FKRP)


Basic Information

Item Value
gene id CI01000308_01132580_01134190
gene name FKRP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1132025 ~ 1134414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01132580_01134190.mRNA
ATATATATAGGTCTCAAGTGATCAAATGAGAGTTTTTCAAATACATGAATGTAGGTTATCTAGATTGCATCTCTAATTGGGACAGCAGATTTGAGCGTATTTCTAGGTCATCTTTGTTTGCTAGACTTAGTAATGATGACTAATAGGCATTTTGTAATACAAACTTGATCTGGATTTTTCAAACAATAACTATGTACTTTGATATGCTTATTAAATGTTTATTAAAATGTTCTCTTTTTTGTCTCCATGTATAGCGTTAATGGACTGTGGTGAATTAAAGGCATTCGAGTTGAATATGGAATCTGTCCCACCAGATGGATGGAATCAGCTGACACAAAGGAATCAGCCGAAACTGATCTGGTCGCAGAAGATGCTTCATCAAATATTTACTTCAAACACTTTCCACTTTGCTTTCTTTTTGACCAAACCAGAATGTTAATGTTCAAGATTTTGGGAATTTGGACAAGTTATGACAGTCAAGAGTATCTGTCCTCTCTCTATTTGAGATTTCACTTACTGTATGTGCCATAAAAGCGTATAACAATAAGAGCCATAATGCGTATCAGCTTTTGCCAGGCTCTGTTAACTGGAGCAATTATTTTGAACTTGCTCATCCTATATTATGTCTCGCGGGCCCAGCAGCAGATGATGGAGAAGCGTCGGGAACAAGGTAAGGGCTTAAAGAAAGCCTCTCTTCCTGTGGCAGGACTGGGAGCTATGGGTAATCTGGTTGGTGGAAGCATAGTTGGAGGCGTCAAATTGGGAGGCCTTGAGGGCAACGTGCGTGGCCCACGCGTCACAATCCTTGTTCGCGAATTTGAAGACTTTGAGAACTATGTTGGTGATGTTGCTCGCTCTTTTCTGCGGCAGAGACCAGAGTTGCCCTTCCTTGCTGTAGCCGAAAGTCCACCGTACCCTCCTTTGGCTCTTCCGGAGGGAGCCCGGCTCCTTGTGTTGTCGCCAAGCCCTGACCAGCCTCCACAAACTCATCGTCCCGAGTTCAACGTGCAGACGGAATTTGCTTTATTAGTTCCAGATGGTGTGGAGCTGGACCACGGCCGACAAATTGAGCGTCTCATTCGGGAGCTGGAAGGGGAAGGTGGCGGGCCGGTCAGACTGGTTGCTGCTCCAGTGCTGACCCGCTCGGCTGTGCAGTGCCTGCACCTTCGGGTTAATCTGCGGGAATGGACCGCCACCTACACCCCTGCGGCCTCAGGGAGCAGCGGTAGCGTCTGCACAGCCCTGCAGGGAGACGCCGTGGTTCTTATCCGTACCGAAGACCTCTTCAATCTCTCGGTTCCTTTAGGTCGCCCCCTGATGTCTTCCTTGTTTGTCCAAACATCTCTGCGGGGATGGAAGGTCAAGCTCCTGGAGGGACCTTCGTTCTCCGCCAGTCATCGGCCGCTGTTTAGCTCTGCACACAACCAGTGGAAGGCCGATAGTCGCCTGAAAGATGCCACCAATCACCTCATGCGTAGCTTTGGCCTGAAGCGCATAGTGTTGCCTGATGGTCGAGATCAGTGGTTTGGCTGCAGTAAAGAGACGCCACGATGTTTCGGCACAGTGCGTGACGACACACCGGAATACCTTTACGTAGAGCGCTGGACTCCACCCTGCTGCTTGCGCGCCCTCCGAGAGACCACTAAATATGTTGTCAACATCTTGGAGAGCTCTGGCGTGCGTTACTGGCTGGAAGGGGGTTCTTTGTTGGGAGCTGCCCGACACCAGGACGTAATCCCATGGGACTATGATGTAGACTTGGGCATCTACTTGGAGGACGTTCCGAATTGCGACTACCTAAAGAACTTGGACTCCGGCTCACTGGTGGATGCTAACGGCTATGTGTGGGAGCGAGCGGTCGAGGGTGACTTCTACCGTGTGCAGTATAGTGAAGCAAACCATTTACATGTAGACTTGTGGCCCTTCTACCCCCGTAATGGAGTTATGACCAGGGACACTTGGACTGAGCACAAACAAGATGTGGAGTTCCCAGAACATTTCCTGCAACCCCTGGTGCCACTGCCGTTTGCTGGCATCACTGCTTATGGTCCGAACAACCACCGTGCCTTCTTGGAACTCAAGTTTGGGGAAGGGGTTATTGAGAACCCCCAGTACCCGAACCCTTCCAAGAAAAGGCTGGACAAGAGTCGCATTTTAGGATCATAGAAAGCAGTAACTCAATGTGACACAATTGTGTAATACGGCATTTCTGACATTTGAAAATCTTTTAAACTTTGAAGAGTATTACTACCAGACTAAAGGTCTCTGTCTGTATCTGAACGCTTGAATGTTAGTATTTCTTGTCAATTTTATTTATTATATGTGTGCGTTGTGGTCTGCTGAGTCACGAATCTTTAAATTGTCTAAATATACTGTATGTAACAATGGTA

Function

symbol description
fkrp Acts upstream of or within several processes, including muscle cell development; regulation of protein glycosylation; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including cloacal chamber; immature eye; nervous system; neural keel; and otic vesicle. Used to study muscular dystrophy. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and muscular dystrophy (multiple). Orthologous to human FKRP (fukutin related protein).

GO:

id name namespace
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K19873 FKRP; fukutin-related protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01132580_01134190.mRNA True 2390 mRNA 0.48 1 1132025 1134414

Neighbor

gene id symbol gene type direction distance location
CI01000308_01003736_01006059 NA coding upstream 124908 1003736 ~ 1007117 (+)
CI01000308_00983925_00991307 NA coding upstream 140636 983925 ~ 991389 (+)
CI01000308_00836074_00942387 DSCAML1 coding upstream 189638 836074 ~ 942387 (+)
CI01000308_00770560_00784179 NA coding upstream 346229 770272 ~ 785796 (+)
CI01000308_00695140_00699646 SCN4B, SCN4BA coding upstream 432124 695140 ~ 699901 (+)
CI01000308_01594565_01626825 CADM2, CADM2B coding downstream 460151 1594565 ~ 1626825 (+)
CI01000308_01645574_01648364 CADM2 coding downstream 511119 1644246 ~ 1648567 (+)
CI01000308_01667660_01683460 MIPEP coding downstream 533246 1667660 ~ 1683598 (+)
CI01000308_01751621_01754826 NA coding downstream 617127 1751541 ~ 1755020 (+)
CI01000308_01757068_01765055 NA coding downstream 621456 1755870 ~ 1766109 (+)
G437837 NA non-coding upstream 17754 1110758 ~ 1114271 (+)
G437985 NA non-coding upstream 44782 1085336 ~ 1087243 (+)
G437952 NA non-coding upstream 73982 1054615 ~ 1058043 (+)
G437854 NA non-coding upstream 83527 1046446 ~ 1048498 (+)
G437853 NA non-coding upstream 238790 878439 ~ 893235 (+)
G437843 NA non-coding downstream 3172 1137586 ~ 1167949 (+)
G438099 NA non-coding downstream 277940 1412354 ~ 1412696 (+)
G438100 NA non-coding downstream 278337 1412751 ~ 1413110 (+)
G438032 NA non-coding downstream 286606 1421020 ~ 1533788 (+)
G438033 NA non-coding downstream 308959 1443373 ~ 1463430 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009046 fkrp coding NC_007126.7 CM002899.2 11679759 ~ 11683529 (-)