CI01000308_01594565_01626825 (CADM2, CADM2B)


Basic Information

Item Value
gene id CI01000308_01594565_01626825
gene name CADM2, CADM2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1594565 ~ 1626825 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01594565_01626825.mRNA
AGCCAGGCTCAGTTCCCCATCACCCAGAATGTGACGGTGGTCGAGGGCAGCACGGCTAACATGACCTGCCGAGTGGATTATAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCACAACAGACCCTCTTCTTTGGGGACAAGAAAGCATTAAGGGACAACCGGATTGAACTGGTTCGAGCCTCGTGGAAGGAGCTGACCATCAGCATCAGTGATGTTACTCTGTCAGATGAAGGACAGTATACATGCTCGCTCTTCACCATGCCTGTCAAGACTTCCAAAGCCTTCCTGACTGTGTTAGGCGTTCCAGCAAAACCAGAAATCACAGGCCTCTCGAGACCTGCCCAGGAGGGGGAGGACGTCACACTGACATGCACCACATCTGGCAGCAAACCAGCTGCTGACATCCGATGGTTTAGAAACGACAAGGAGGTGCAAGGTCAGAAGGAGGTAAACGCCACTGGGAGGTCATTCACGGTCAGGAGCAATGTACACCTCAAGGTGGACAGGAAGGACGACGGAGCAGCGTACACCTGCGTGGTGGAGCACATAGCTCTAGGCTCCTTGCCACACCAAGTCACAGAAGTGCTGGAGGTCCACTATCCTCCTCAGGTCCAGATTGTGCACTCAGTAATAGTACCTCAGGAAGGACAGTACTTCAAACTGGAGTGTGTATCCAAAGGCAACCCACTGCCTGAGCCAGTTTTATGGACAAAAGATGGAGGTGAGCTTCCTGATGTTGAACGAATGATCGTGGAGGGTAGAGATCTAATCATTACCACACTGAACAAAACAGACAACGGCACATATCGCTGTGAGGCCAGCAACCAACTCGGCACCAACAGGGATGAATTTACGCTGTATGTGTAT

Function

symbol description
cadm2b Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; immature eye; and nervous system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).
cadm2 Predicted to be involved in cell adhesion. Predicted to be located in plasma membrane. Implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Biomarker of hepatocellular carcinoma and retinoblastoma.

GO:

id name namespace
GO:0008037 cell recognition biological_process

KEGG:

id description
K06782 CADM2, IGSF4D, NECL3; cell adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01594565_01626825.mRNA True 870 mRNA 0.52 6 1594565 1626825

Neighbor

gene id symbol gene type direction distance location
CI01000308_01132580_01134190 FKRP coding upstream 460151 1132025 ~ 1134414 (+)
CI01000308_01003736_01006059 NA coding upstream 587448 1003736 ~ 1007117 (+)
CI01000308_00983925_00991307 NA coding upstream 603176 983925 ~ 991389 (+)
CI01000308_00836074_00942387 DSCAML1 coding upstream 652178 836074 ~ 942387 (+)
CI01000308_00770560_00784179 NA coding upstream 808769 770272 ~ 785796 (+)
CI01000308_01645574_01648364 CADM2 coding downstream 18708 1644246 ~ 1648567 (+)
CI01000308_01667660_01683460 MIPEP coding downstream 40835 1667660 ~ 1683598 (+)
CI01000308_01751621_01754826 NA coding downstream 124716 1751541 ~ 1755020 (+)
CI01000308_01757068_01765055 NA coding downstream 129045 1755870 ~ 1766109 (+)
CI01000308_01775458_01781291 NA coding downstream 148587 1775412 ~ 1781291 (+)
G438036 NA non-coding upstream 52700 1534018 ~ 1541865 (+)
G438032 NA non-coding upstream 60777 1421020 ~ 1533788 (+)
G438033 NA non-coding upstream 131135 1443373 ~ 1463430 (+)
G438100 NA non-coding upstream 181455 1412751 ~ 1413110 (+)
G438099 NA non-coding upstream 181869 1412354 ~ 1412696 (+)
G438170 NA non-coding downstream 106579 1733404 ~ 1734202 (+)
G438174 NA non-coding downstream 114734 1741559 ~ 1741931 (+)
G438125 NA non-coding downstream 163642 1790467 ~ 1798846 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008313 cadm2b coding NC_007126.7 CM002899.2 7992906 ~ 8151485 (+)