CI01000308_01645574_01648364 (CADM2)


Basic Information

Item Value
gene id CI01000308_01645574_01648364
gene name CADM2
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 1644246 ~ 1648567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_01645574_01648364.mRNA
CTTTAAATTGATGTTGCTTGGGCTCCAAAACTCAAAGCAGCATGACATACTGGGGATGTTTCTGTGATCCGGCATTGAATAAACACCAGTTTACAATCACTCAATTTGACTGCATGGGGATGTCATACGGCAATCCTAACGCTCTGACGCAGCACGGCCCCGACCACGCGCTCATCGGCGGAGTGGTGGCCGTGGTGGTCTTCATCACCCTGTGCTTCATCATCGTCCTGGGCCGATATCTGGCCAGGCACAAAGGGACATACTTAACCAATGAGGCCAAAGGAGCGGAGGACGCCCCTGACGCAGACACTGCCATCATCAATGCGGAGGGGAACCACGCACATGCAGAGGAAAAGAAAGAGTACTTCATTTAGCACCTCTGTTTTTTTTCTGTTCAGTATTGTCACGGCAACACTGCGAGCCAGCAGAGGAGGCGTTATAGCGCTCCGCTCCCTAACAGCACTAGTCTGGTCTGGCTTTGTCTCTGTTTGCGAACCTCTTTAAGGCCAAATTCGACACGCCACCTGCTGCAAAAGAATGTTGCCTTTTTTTAAACGAATCCTAATCGTCCAAAAAA

Function

symbol description
cadm2 Predicted to be involved in cell adhesion. Predicted to be located in plasma membrane. Implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Biomarker of hepatocellular carcinoma and retinoblastoma.

GO: NA

KEGG:

id description
K06782 CADM2, IGSF4D, NECL3; cell adhesion molecule 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_01645574_01648364.mRNA False 577 mRNA 0.50 3 1645533 1648567

Neighbor

gene id symbol gene type direction distance location
CI01000308_01594565_01626825 CADM2, CADM2B coding upstream 18708 1594565 ~ 1626825 (+)
CI01000308_01132580_01134190 FKRP coding upstream 511119 1132025 ~ 1134414 (+)
CI01000308_01003736_01006059 NA coding upstream 638416 1003736 ~ 1007117 (+)
CI01000308_00983925_00991307 NA coding upstream 654144 983925 ~ 991389 (+)
CI01000308_00836074_00942387 DSCAML1 coding upstream 703146 836074 ~ 942387 (+)
CI01000308_01667660_01683460 MIPEP coding downstream 19093 1667660 ~ 1683598 (+)
CI01000308_01751621_01754826 NA coding downstream 102974 1751541 ~ 1755020 (+)
CI01000308_01757068_01765055 NA coding downstream 107303 1755870 ~ 1766109 (+)
CI01000308_01775458_01781291 NA coding downstream 126845 1775412 ~ 1781291 (+)
CI01000308_01829826_01849607 NUMBL coding downstream 181259 1829826 ~ 1850544 (+)
G438036 NA non-coding upstream 103668 1534018 ~ 1541865 (+)
G438032 NA non-coding upstream 111745 1421020 ~ 1533788 (+)
G438033 NA non-coding upstream 182103 1443373 ~ 1463430 (+)
G438100 NA non-coding upstream 232423 1412751 ~ 1413110 (+)
G438099 NA non-coding upstream 232837 1412354 ~ 1412696 (+)
G438170 NA non-coding downstream 84837 1733404 ~ 1734202 (+)
G438174 NA non-coding downstream 92992 1741559 ~ 1741931 (+)
G438125 NA non-coding downstream 141900 1790467 ~ 1798846 (+)
G438130 NA non-coding downstream 172748 1821315 ~ 1857127 (+)

Expression


Co-expression Network