XLOC_012863


Basic Information

Item Value
gene id XLOC_012863
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31073243 ~ 31075619 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026905
gtttatttgCCAGTGACAGCACGCACTCAAGTGATCATGGCGAAGATTGAGTGGGCGATGTGGGCCAACGAGCAAGCTTTGGCTGCTGGACTCATTTATCTGACTGGTGGAATCGTTGGGGTGGCTGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTTGGGATGTATCCTTACATGCTATGATTGAATGTTTATGCTCTTTCGGTCTTTCAGTGAGTAAAGtgccttattaaaaaaataaagtaccaCAGTCTATTTATTGAGACCTTAACTGTGAAAGTGctgctggtgtgtttgtgtgtttgcttgaATATCCACGCAGCAAACGGGGCAAAGGCACCAGTATTGAGAGAAGCGGTCAGTACTGCTTTACAGTGTGTGTAAAATCTTTTGGACCCCTGACCAGAAACTATTACGTCAGAGCTTTCTTACATGCTGCGCTCTGTGTCCCT
>TCONS_00027120
gtttatttgCCAGTGACAGCACGCACTCAAGTGATCATGGCGAAGATTGAGTGGGCGATGTGGGCCAACGAGCAAGCTTTGGCTGCTGGACTCATTTATCTGACTGGTGGAATCGTTGGGGTGGCTGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTTGGGATGTATCCTTACATGCTATGATTGAATGTTTATGCTCTTTCGGTCTTTCAGTGAGTAAAGtgccttattaaaaaaataaagtaccaCAGTCTATTTATTGAGACCTTAACTGTGAAAGTGctgctggtgtgtttgtgtgtttgcttgaATATCCACGCAGCAAACGGGGCAAAGGCACCAGTATTGAGAGAAGCGGTCAGTACTGCTTTACAGTGTGTGTAAAATCTTTTGGACCCCTGACCAGAAACTATTACGTCAGAGCTTTCTTACATGCTGCGCTCTGTGTCCCTGGAGGGTTCATGTTAGCCACAGTTTTGGGATGTGTGTGTCTAGGAATGGCAAGTTTGATCTACCTCTCTGCAGCTATTCATGGAGAGCACTGGGAGCCTATACTCCACATAGAGAC
>TCONS_00026906
CACGCACTCAAGTGATCATGGCGAAGATTGAGTGGGCGATGTGGGCCAACGAGCAAGCTTTGGCTGCTGGACTCATTTATCTGACTGGTGGAATCGTTGGGGTGGCTGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTTGGGATGTATCCTTACATGCTATGATTGAATGTTTATGCTCTTTCGGTCTTTCAGTGAGTAAAGtgccttattaaaaaaataaagtaccaCAGTCTATTTATTGAGACCTTAACTGTGAAAGTGctgctggtgtgtttgtgtgtttgcttgaATATCCACGCAGCAAACGGGGCAAAGGCACCAGTATTGAGAGAAGGTAAGTGTTGATGAAAGCCAAGTTACAGGAAGTACAGGCTGGTGATTTCAACACACCACCAACAATTCATAACCAAAAAAAACACTGAGTCATTTGTATAGTGACAACTTCCTTATGTGAACCATGCATTACTTAAAAGAaagtttttatgtttaattacagCGGTCAGTACTGCTTTACAGTGTGTGTAAAATCTTTTGGACCCCTGACCAGAAACTATTACGTCAGAGCTTTCTTACATGCTGCGCTCTGTGTCCCTGGAGGGTTCATGTTAGCCACAGTTTTGGGATGTGTGTGTCTAGGAATGGCAAGTTTGATCTACCTCTCTGCAGCTATTCATGGAGAGCACTGGGAGCCTATACTCCACATAGAGAC
>TCONS_00025671
GCACTCAAGTGATCATGGCGAAGATTGAGTGGGCGATGTGGGCCAACGAGCAAGCTTTGGCTGCTGGACTCATTTATCTGACTGGTGGAATCGTTGGGGTGGCTGGTCAGTTCAGAGGCTGGCAGTTTGCAGCTTTTGGGATTGctgctggtgtgtttgtgtgtttgcttgaATATCCACGCAGCAAACGGGGCAAAGGCACCAGTATTGAGAGAAGCGGTCAGTACTGCTTTACAGTGTGTGTAAAATCTTTTGGACCCCTGACCAGAAACTATTACGTCAGAGCTTTCTTACATGCTGCGCTCTGTGTCCCTGGAGGGTTCATGTTAGCCACAGTTTTGGGATGTGTGTGTCTAGGAATGGCAAGTTTGATCTACCTCTCTGCAGCTATTCATGGAGAGCACTGGGAGCCTATACTCCACATAGAGACAAAAAAACGTCTTGGGGAGAGCATCAAAGAACCTCCTCAAAACCCACCTCCCAGACCTCCCCCTGAACTGCGACGTAAAAAAGCAGATAACCTGGATGCTGCAGCATATGACAATCCTATGTCTGTCACCATCAACGAATAAAGATTTCCTAAAAGTGTAAATAGTTCAAGAGGTGATGGCAACAAGTAACAGTAATATGGAATGTTTATGATGAGTTATACAGACAAACTGCATTATCATCTGATATAATTGTCTTAAAACTTAGGATGTCACTCATTTGTTGTGTCTAAAATAATGCCACATTTTAGTTCCACTTTTTTGTTATATGTGTAACCTTTTtctgtgtctttttttttgttgtctagaaacaatattttatttatctctgatttttaaagtaaagaaaacaaaatcatgaGATGGTCATGTATGAATGATGAAAgcctgttttaaaatgttttgttacaaGGAACAAGGAAGTTAATTTCCTTTTGTGTCCTCTCGATGACTTGTTTGAAATGTtatatgaaaacaaacaaaaaaaacttcatCTGACATCTACCAAGTAGATATAAACAATAAAGATAAATGGAAAATATCTG
>TCONS_00026907
TGctgctggtgtgtttgtgtgtttgcttgaATATCCACGCAGCAAACGGGGCAAAGGCACCAGTATTGAGAGAAGCGGTCAGTACTGCTTTACAGTGTGTGTAAAATCTTTTGGACCCCTGACCAGAAACTATTACGTCAGAGCTTTCTTACATGCTGCGCTCTGTGTCCCTGGAGGGTTCATGTTAGCCACAGTTTTGGGATGTGTGTGTCTAGGAATGGCAAGTTTGATCTACCTCTCTGTAAGTTCAtccaaataaatgcaaaataaataaatgcttatttatCTGAAGATAAGGCAAACAACATGACTCAATTAATGTAACTGTAACAAAATGAAGATTGGGGAACTAAAACCTTAGTTTGCTTCCTGCACACTTACTTCCTCTTCAAAAACCCCTTTTCACTTTTAAACTGTTGCAGTTCACCCTAaagaaatttttattatttcaccaCTGATTGTTGGAAACTCACATTTCTTCTGTGAAACAAATAAAAGTGTAGAGAGCATAAAAAA

Function

GO:

id name namespace
GO:0048568 embryonic organ development biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-040426-1526 Predicted to enable heme binding activity; metal ion binding activity; and oxidoreductase activity. Acts upstream of or within macrophage chemotaxis and neutrophil migration. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of NADPH oxidase complex. Human ortholog(s) of this gene implicated in artery disease (multiple); asthma; chronic obstructive pulmonary disease; and phagocyte bactericidal dysfunction (multiple). Orthologous to human CYBA (cytochrome b-245 alpha chain).

Ensembl:

ensembl_id ENSDARG00000018283

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026905 False 452 lncRNA 0.46 4 31073243 31074445
TCONS_00027120 False 568 lncRNA 0.46 5 31073243 31075016
TCONS_00026906 False 711 lncRNA 0.43 4 31073262 31075016
TCONS_00025671 False 1033 mRNA 0.40 6 31073265 31075619
TCONS_00026907 True 516 lncRNA 0.39 3 31073985 31074789

Neighbor

gene id symbol gene type direction distance location
XLOC_012862 mvda coding upstream 4488 31056645 ~ 31068755 (+)
XLOC_012861 cd151l coding upstream 49796 30998472 ~ 31023447 (+)
XLOC_012860 mthfsd coding upstream 120961 30878196 ~ 30952282 (+)
XLOC_012859 foxf1 coding upstream 222878 30847237 ~ 30850365 (+)
XLOC_012858 irf8 coding upstream 499394 30567945 ~ 30573849 (+)
XLOC_012864 tcf25 coding downstream 41517 31117136 ~ 31206658 (+)
XLOC_012865 NA coding downstream 205231 31280850 ~ 31459487 (+)
XLOC_012866 NA coding downstream 443959 31519578 ~ 31521691 (+)
XLOC_012867 dhx36 coding downstream 535125 31610744 ~ 31837760 (+)
XLOC_012868 BX908763.1 coding downstream 769885 31845504 ~ 31846556 (+)
XLOC_012854 NA non-coding upstream 941412 30129771 ~ 30131831 (+)
XLOC_012849 CT025546.2 non-coding upstream 1898035 29175093 ~ 29175208 (+)
XLOC_012845 CR769777.2 non-coding upstream 2768926 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 3336403 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 3876917 27196210 ~ 27196326 (+)
XLOC_012869 NA non-coding downstream 796402 31872021 ~ 31872676 (+)
XLOC_012870 NA non-coding downstream 923589 31999208 ~ 32002709 (+)

Expression


Co-expression Network