G437917


Basic Information

Item Value
gene id G437917
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 785964 ~ 821603 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU502626
TGCGCGCGTGGCGGGGCGGGAACCGAGAGAGCGCGAGAGAAGAGACAAGGGACAAGCCAACAGTCAGAATATTTATATCAGAAAAACAGAAGGTGAACCTGGTTAGCTGCCACACAATATCAAACGCTCGGATTTTTGTCCATCCATAACTTTTCGTTACATTTCACAACGTCAAATAATCCACTTAACAGACAACGTCTTGACAACCAGACAGTCGTGCGGATCGTGTCAATAGGAAGCAGCGCTTGCCCCACTGTTGCCCATCCACTTACAAGTAGCCTACCCTTAAGGAGACGAGACGAGTTGCCATGGAAACTGTTCTGGTCTTCCTTTTTTCCCTCCTAGTGGCGGCTTTGTCTGAATCTGAGCCCCAAGGTGCAAAAGGGAAGAATTTGAACCCATTTATATACGACTATGAGAGTTTGAGGATCTGCGGTTTGGCGTTTGCTGTGGTGCTGTTCGCTCTTGGAATGCTCCTTATTCTCAGCCGCAGATGCCGCTGCAGTATCAACCAGAAGCCCAAGGCTCCAGGAGATGAAGAAGCTCAAGCAGAGAACCTCGTGGTCTCCAAGGACAAGGAGACCCCTAAAGCAGAGAACTGAAACATACCAGTGTTGTTAAACACATAGCCGTGGCTGAACGACTTCACTGATGCTGAGGATGGTGATAATGATGAAGCTGATTCCAGACCATGGCTATGAGAGGAGAAAGAGGAGACGGAGATTTGTGGGGGAGGAGACTATAACTCGGATTTTTAATGGGCCAGTGTCTTGTACGTAGACCTCTAGTCCTGTCACGTGAACAGTAACTGTATCCGTCTTTCCGTCCGTGCCCTTTTGCGACAGTCCGTCTTGAGTGAGTTGTTTTAGCAAAACTAGCCACTTTCTGCAGATCATTCTTAACGTTTCTGGCTCCTCCACAACTGAACATGTGTGTGTGGTTTAAAGGAACAGTTCACCCAAAAATTCCGTTCCAAACATGTATGCAGTTATTTTTTACATCGAACACAAAAGGAAACAAAAGATTCTCTATGTAGCCCTTATTATATAATGACAAAACCTAAAAAACACCATAGTTTTAATATTTGGATGAACTGTCTCTTTAATAATTTTGCTTTAATGTCTAACAGTGAATAACTTTTACTGTTATTAATGGTGTGACCACATGTTATTGTCATTTGTGTCCCACCTGCTGTTTTTTTCTCTTGTAGATTGTATAGACTATATGCAGACATATTTAAATACACTTAAGTATTTAATATAAGTATTGATTCACATGTGATGCAGAATATATATTTGAATATACAGTGTATGCATGTGTGTGCACCTTTGGATAGATACTGAAGAGCTTGTATGAATGCGTGCGTGTGTGGGTGTGCCCACATCCAGGGCACCTCCTCCCGACAATCTTTCAATCATTCTACACAGATCAAGCACGAAAACAAAACAGTAACACCACTGTACCACAAGGGGCACCATACCGCTGTCCTCTGATCAGCTTCAACACTGCCGGGCTCACTGCCCTCATTTGGACCCACAGTCTAAACGTCTGCGGCCTGAGAATGAGACCGCAGGAGAAGTTCACTGCACCATATAGTGCCGCTAACCTGTGTCTTTTCCCTTTTCATCACACGTCTTCTGTAGCTTATGTGTTCTCTTTCTTAAAGGGATAGTGCAGCCAAAAATAAAGTAAATATTTTGCCAGTGTCTACTCACCATCATGTCGTTAAAACTCAACAAACAAATGATTTTCTCTGTTATGTAGAACACAAAAGGAGACAAGAAAGTAAAGCGAAAACTTCAGTTTCAACATGAATGTTGGCATATGCATGCACACATAGGCGGTCAACATGTGCACTAGAGAGTTTCATCTTTGTGTATGTGTTAATTCTATCCAGAAGTTTTGAGTGGCAAAAATGTCTGTTGTTGTTTCATTTTCGATTAAATAAATGCAAGGTGCATGTGCGAGCTGAGCTACATGCAGCTAGAAAAAAGCATAATATAGACAGTAAAATCCCCAGTTAAATCAACTCTGCTTAGAGTACATATGTTCCCTCTCTAAATAGTGTTAAAGTAACACTGAAGGAGAGTTAAAGTTAATGAGATAATTAAGCGATTAATTAAGTGATGATTGAGCATTAGTGATGAACACCTGCTGTTAACAAGCAGAATCACCAAAGAAAAGAAAAACACAAAAACTACAACTGACTTTAACTCTGCTTCAGTGTTACTTTAACACTATTTAGAGAGGGACCATATGTACTCTAAGCAGAGTTGATTTAACTCTGGGGATTTTGCTGTGTAACCAGTGTTGGGGAAGGTTACTTTTAAAAGTAATGCATTACAATATTGCGTTACTCCCTAAAAAAGTTACTTAGTTACTTTTTATGGAAAATAATGTGTTACATTATTTTTGTCTTACTTTTTCTCATCTGGGCTGGGCTGTTTTTATAACAACAAAAAAGTTCAATTTTTGGCAAATTTAAAAGCTCCTTCACACCAAAAGTGAAATGAATTAGCCTCAGGCTGAAGGAAATGCAAATTCACGCCTGTATAGTAGAGGGCGCAAGCCTTTCAGCTGTACTATCATTCTGGATTGCAGAAGAATAGGACACAGGAGAAGTAAATGAGCAAATGTATGCTAACATTAAGTCTAGAACTAGTTTAGAATAACCAGCGTTGCCAAGTCTGCAATTTTCCAGCAGAATTGGGCTACTTTAACACTGTTGCGACTCCAAATAACATGATATTTAGCCCCTGGACTGCAAATTTTACCAGGGGAACGCGATTTTCACCGGAGGACCCCACCTGAAATGCGATTAGGCTAGTTTTGAGAAGCAATTGGGCAGGTTTTGTTGTGAAAACTTGGCAACCCTGAGAATAACCATCATGTTTACTCACACAATGCCTCTGCACTCCTGATTTCTTTCAACTTGGGGACAGGAGGTGTCAGTCAATAAATGGGAAAACAAAGTAACTTGTTTCACTTATTTGAAAAAGTAACTGATATTTTGTTGTAAATTTAAAAGTAATGTGTTACTTTTCTAGTTACTTGAAAAAAGTAATCTGATTACGTAACTCGCATTACTTGTAATGCGTTACCCCCAACACTGCTTATAACTATCATAAAATATTCCACATATGATGTATAATATGTAAGGAACAGACTGAAAATCTCCACTGTAGCTCTCAAATCCCATTTAGTGCTCTATTGTACGCATTTCGCGTGATTAACATGCAACTCTGCACCAAATTTTAATGTAAGTGAGCATGAATGAGATTTGAATGTTTTCAGGGAATAACGACTTTTGGGTCTGAGTAAACAATAACACATTAGTGATTTTTGGGTGAACTATCTCTTTAATATCACTCATATTTATAAACACTGTTCAATGGGACCAAAATGTCGGCCTCTAAAGAAACCAACCTTTGCATTTGTGTGCGTCTGCGTACATGAGTGTGTGTTGTTCCACACATCACTTGCTGTGATAAACCTATTGGAGTTATAGAAATGTAGGTAAGTTTATAAAGAGAGTAGCATTTCACTAAATATTAATCACATGTAGGCTATTCAAGAACACAGTCTAACGCTACAGATGCTTCGCTATTAGAGAAGAATTTAATACATATTCGTCTCATATCTGTGCAGCTACTGTGTATGGCCGCTCTTTGTGCTCCGAAATAAATAAAGTCTTTGTCTGACACAGGCATCGGTGTGTAGATTCGTTTTTTTTTTATCTCTGAACAGAGACGCCAAGCGTCAATCAATCTCTCCTTTTCTTCTCGCTCCTTTAAAAAGGTCATCCATCACCTGCCAGAAAAAGCAGCTCTGTTCAATATGTCAGGTAAAATTTTATTTAAGACCATTTGGACTCCATTTGTTATCCATCAGAATGATCTAAATTTCCCATATTGTCCCATGTGGTCAACTAGAAAAGTAGCCTACTTGAAGTCAATTACGGACGGCTCAAAAAAACTCTCTGAGGTCCGTCACTTATAGGCTACTTCAAAGTCTAGACACAATATGGCCACGATCACTCCCAGTGTTTTATACACTGGAGTAACTGAACTTCACTTGGGCGATGATTCCAAAGGTTGGGCTCAGTGGTGTTTTATCATAGTTTGAAGGCCAGTGTTTATGGGGTAATAAATGTGTTTCAAAGAGTGGTGGGGCAGCCAGATTTACAAATGCTTGCTCTGGGAGGCAGGGAGGGGTAGAGGGATGAAATAGCCTGGACTAAAGACACACTCTCACATTAGTCAAGACCTCAGGAGGAAAAGGAGCTTTCCACAGTACAGTTTTGCCATTCTACACTGTGACCCACAGAGAGAGCAGCCATGTCCTCTGGAGCAGCCCAGCCTACAGTAGACCCTGATGCTGACTTTGTCTATGACTATGAGAATCTGCGCATTGGAGGCCTGGTGTTTGCTGGGATCCTTGTGGTACTCTCTGTCTTCCTCCTGGCAGGTAACCACATCAAACGGTGTGGCAAGCGTAAGGCAAAGCATGGGAATGAAGCAATTTAAGATGGCTCCTGTCTGTACTGGATGGTTTTGGGATGTGAATAGCCTACGAACTGAAAGTCATATTATTAGCCTACATTTAACTTAACACTTTAAAAAAAAAAAAAAAAAAAAAACAAACAAAAAAAAAAAAAACCTGTGATTTAATTGTTTTGATTCATTAAAAACATTGATTTGGAAAAACAG
>TU502627
TGCGCGCGTGGCGGGGCGGGAACCGAGAGAGCGCGAGAGAAGAGACAAGGGACAAGCCAACAGTCAGAATATTTATATCAGAAAAACAGAAGGTGAACCTGGTTAGCTGCCACACAATATCAAACGCTCGGATTTTTGTCCATCCATAACTTTTCGTTACATTTCACAACGTCAAATAATCCACTTAACAGACAACGTCTTGACAACCAGACAGTCGTGCGGATCGTGTCAATAGGAAGCAGCGCTTGCCCCACTGTTGCCCATCCACTTACAAGTAGCCTACCCTTAAGGAGACGAGACGAGTTGCCATGGAAACTGTTCTGGTCTTCCTTTTTTCCCTCCTAGTGGCGGCTTTGTCTGAATCTGAGCCCCAAGGTGCAAAAGGGAAGAATTTGAACCCATTTATATACGACTATGAGAGTTTGAGGATCTGCGGTTTGGCGTTTGCTGTGGTGCTGTTCGCTCTTGGAATGCTCCTTATTCTCAGCCGCAGATGCCGCTGCAGTATCAACCAGAAGCCCAAGGCTCCAGGAGATGAAGAAGCTCAAGCAGAGAACCTCGTGGTCTCCAAGGACAAGGAGACCCCTAAAGCAGAGAACTGAAACATACCAGTGTTGTTAAACACATAGCCGTGGCTGAACGACTTCACTGATGCTGAGGATGGTGATAATGATGAAGCTGATTCCAGACCATGGCTATGAGAGGAGAAAGAGGAGACGGAGATTTGTGGGGGAGGAGACTATAACTCGGATTTTTAATGGGCCAGTGTCTTGTACGTAGACCTCTAGTCCTGTCACGTGAACAGTAACTGTATCCGTCTTTCCGTCCGTGCCCTTTTGCGACAGTCCGTCTTGAGTGAGTTGTTTTAGCAAAACTAGCCACTTTCTGCAGATCATTCTTAACGTTTCTGGCTCCTCCACAACTGAACATGTGTGTGTGGTTTAAAGGAACAGTTCACCCAAAAATTCCGTTCCAAACATGTATGCAGTTATTTTTTACATCGAACACAAAAGGAAACAAAAGATTCTCTATGTAGCCCTTATTATATAATGACAAAACCTAAAAAACACCATAGTTTTAATATTTGGATGAACTGTCTCTTTAATAATTTTGCTTTAATGTCTAACAGTGAATAACTTTTACTGTTATTAATGGTGTGACCACATGTTATTGTCATTTGTGTCCCACCTGCTGTTTTTTTCTCTTGTAGATTGTATAGACTATATGCAGACATATTTAAATACACTTAAGTATTTAATATAAGTATTGATTCACATGTGATGCAGAATATATATTTGAATATACAGTGTATGCATGTGTGTGCACCTTTGGATAGATACTGAAGAGCTTGTATGAATGCGTGCGTGTGTGGGTGTGCCCACATCCAGGGCACCTCCTCCCGACAATCTTTCAATCATTCTACACAGATCAAGCACGAAAACAAAACAGTAACACCACTGTACCACAAGGGGCACCATACCGCTGTCCTCTGATCAGCTTCAACACTGCCGGGCTCACTGCCCTCATTTGGACCCACAGTCTAAACGTCTGCGGCCTGAGAATGAGACCGCAGGAGAAGTTCACTGCACCATATAGTGCCGCTAACCTGTGTCTTTTCCCTTTTCATCACACGTCTTCTGTAGCTTATGTGTTCTCTTTCTTAAAGGGATAGTGCAGCCAAAAATAAAGTAAATATTTTGCCAGTGTCTACTCACCATCATGTCGTTAAAACTCAACAAACAAATGATTTTCTCTGTTATGTAGAACACAAAAGGAGACAAGAAAGTAAAGCGAAAACTTCAGTTTCAACATGAATGTTGGCATATGCATGCACACATAGGCGGTCAACATGTGCACTAGAGAGTTTCATCTTTGTGTATGTGTTAATTCTATCCAGAAGTTTTGAGTGGCAAAAATGTCTGTTGTTGTTTCATTTTCGATTAAATAAATGCAAGGTGCATGTGCGAGCTGAGCTACATGCAGCTAGAAAAAAGCATAATATAGACAGTAAAATCCCCAGTTAAATCAACTCTGCTTAGAGTACATATGTTCCCTCTCTAAATAGTGTTAAAGTAACACTGAAGGAGAGTTAAAGTTAATGAGATAATTAAGCGATTAATTAAGTGATGATTGAGCATTAGTGATGAACACCTGCTGTTAACAAGCAGAATCACCAAAGAAAAGAAAAACACAAAAACTACAACTGACTTTAACTCTGCTTCAGTGTTACTTTAACACTATTTAGAGAGGGACCATATGTACTCTAAGCAGAGTTGATTTAACTCTGGGGATTTTGCTGTGTAACCAGTGTTGGGGAAGGTTACTTTTAAAAGTAATGCATTACAATATTGCGTTACTCCCTAAAAAAGTTACTTAGTTACTTTTTATGGAAAATAATGTGTTACATTATTTTTGTCTTACTTTTTCTCATCTGGGCTGGGCTGTTTTTATAACAACAAAAAAGTTCAATTTTTGGCAAATTTAAAAGCTCCTTCACACCAAAAGTGAAATGAATTAGCCTCAGGCTGAAGGAAATGCAAATTCACGCCTGTATAGTAGAGGGCGCAAGCCTTTCAGCTGTACTATCATTCTGGATTGCAGAAGAATAGGACACAGGAGAAGTAAATGAGCAAATGTATGCTAACATTAAGTCTAGAACTAGTTTAGAATAACCAGCGTTGCCAAGTCTGCAATTTTCCAGCAGAATTGGGCTACTTTAACACTGTTGCGACTCCAAATAACATGATATTTAGCCCCTGGACTGCAAATTTTACCAGGGGAACGCGATTTTCACCGGAGGACCCCACCTGAAATGCGATTAGGCTAGTTTTGAGAAGCAATTGGGCAGGTTTTGTTGTGAAAACTTGGCAACCCTGAGAATAACCATCATGTTTACTCACACAATGCCTCTGCACTCCTGATTTCTTTCAACTTGGGGACAGGAGGTGTCAGTCAATAAATGGGAAAACAAAGTAACTTGTTTCACTTATTTGAAAAAGTAACTGATATTTTGTTGTAAATTTAAAAGTAATGTGTTACTTTTCTAGTTACTTGAAAAAAGTAATCTGATTACGTAACTCGCATTACTTGTAATGCGTTACCCCCAACACTGCTTATAACTATCATAAAATATTCCACATATGATGTATAATATGTAAGGAACAGACTGAAAATCTCCACTGTAGCTCTCAAATCCCATTTAGTGCTCTATTGTACGCATTTCGCGTGATTAACATGCAACTCTGCACCAAATTTTAATGTAAGTGAGCATGAATGAGATTTGAATGTTTTCAGGGAATAACGACTTTTGGGTCTGAGTAAACAATAACACATTAGTGATTTTTGGGTGAACTATCTCTTTAATATCACTCATATTTATAAACACTGTTCAATGGGACCAAAATGTCGGCCTCTAAAGAAACCAACCTTTGCATTTGTGTGCGTCTGCGTACATGAGTGTGTGTTGTTCCACACATCACTTGCTGTGATAAACCTATTGGAGTTATAGAAATGTAGGTAAGTTTATAAAGAGAGTAGCATTTCACTAAATATTAATCACATGTAGGCTATTCAAGAACACAGTCTAACGCTACAGATGCTTCGCTATTAGAGAAGAATTTAATACATATTCGTCTCATATCTGTGCAGCTACTGTGTATGGCCGCTCTTTGTGCTCCGAAATAAATAAAGTCTTTGTCTGACACAGGCATCGGTGTGTAGATTCGTTTTTTTTTTATCTCTGAACAGAGACGCCAAGCGTCAATCAATCTCTCCTTTTCTTCTCGCTCCTTTAAAAAGGTCATCCATCACCTGCCAGAAAAAGCAGCTCTGTTCAATATGTCAGGTAAAATTTTATTTAAGACCATTTGGACTCCATTTGTTATCCATCAGAATGATCTAAATTTCCCATATTGTCCCATGTGGTCAACTAGAAAAGTAGCCTACTTGAAGTCAATTACGGACGGCTCAAAAAAACTCTCTGAGGTCCGTCACTTATAGGCTACTTCAAAGTCTAGACACAATATGGCCACGATCACTCCCAGTGTTTTATACACTGGAGTAACTGAACTTCACTTGGGCGATGATTCCAAAGGTTGGGCTCAGTGGTGTTTTATCATAGTTTGAAGGCCAGTGTTTATGGGGTAATAAATGTGTTTCAAAGAGTGGTGGGGCAGCCAGATTTACAAATGCTTGCTCTGGGAGGCAGGGAGGGGTAGAGGGATGAAATAGCCTGGACTAAAGACACACTCTCACATTAGTCAAGACCTCAGGAGGAAAAGGAGCTTTCCACAGTACAGGTGAGCTGAGATGGCAGTGATTCTTGCGTTAATGTTATGGATTCTTTACAGAATGTTTTACATCAGAATTTCTAAAATGGTCGAATTTGACAAGAACAACGCGTTTTCATTGGTTTATTTATCATGAAGTGACAACTGAGGACAAGTTTAAGTTGCATGTTCATGCTCTTGTTGAAAACATGTTGAAAATGACAGAAAAACAAACCCAAATGGATAAGTGGTGTAAGTTAGCATGATCTTATTTTGTGAAAATTTAATTTTGGCGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU502626 False 4709 lncRNA 0.40 14 785964 821603
TU502627 True 4564 lncRNA 0.40 9 785964 808147

Neighbor

gene id symbol gene type direction distance location
CI01000308_00770560_00784179 NA coding upstream 168 770272 ~ 785796 (+)
CI01000308_00695140_00699646 SCN4B, SCN4BA coding upstream 86063 695140 ~ 699901 (+)
CI01000308_00657092_00659557 SCN2B coding upstream 125476 656991 ~ 660488 (+)
CI01000308_00640975_00648455 NA coding upstream 136823 640908 ~ 649141 (+)
CI01000308_00435833_00465809 NA coding upstream 319918 435553 ~ 466046 (+)
CI01000308_00836074_00942387 DSCAML1 coding downstream 14471 836074 ~ 942387 (+)
CI01000308_00983925_00991307 NA coding downstream 162322 983925 ~ 991389 (+)
CI01000308_01003736_01006059 NA coding downstream 182133 1003736 ~ 1007117 (+)
CI01000308_01132580_01134190 FKRP coding downstream 310422 1132025 ~ 1134414 (+)
CI01000308_01594565_01626825 CADM2, CADM2B coding downstream 772962 1594565 ~ 1626825 (+)
G437905 NA non-coding upstream 30003 753697 ~ 755961 (+)
G437906 NA non-coding upstream 44700 738507 ~ 741264 (+)
G437831 NA non-coding upstream 251433 534330 ~ 534531 (+)
G437827 NA non-coding upstream 257507 528194 ~ 528457 (+)
G437814 NA non-coding upstream 291209 494497 ~ 494755 (+)
G437938 NA non-coding downstream 786 822389 ~ 822661 (+)
G437939 NA non-coding downstream 1121 822724 ~ 823150 (+)
G437941 NA non-coding downstream 10289 831892 ~ 832153 (+)
G437853 NA non-coding downstream 56836 878439 ~ 893235 (+)
G437854 NA non-coding downstream 224843 1046446 ~ 1048498 (+)

Expression


Co-expression Network