G438423


Basic Information

Item Value
gene id G438423
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 927666 ~ 931002 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU503190
GTCAGAGTGTATTAGTCAGGCAGCAGTGTTTTAAGACTATATGAGTGTGTCCATGAGCATTGGGATCATTCAGTGTGTGTACGCACTAACTGTGGCTTCCTGGCACGAGGTCTCATTCTCACTGCGATGATTGTTCTGGCATGTCTCCTTAAAGCAGACAGATATGTCATAACTGAACATTTCAGAAAGAGAGAGAGGAAGAGAGGCTGAATTCAACAGGCCTGTCAACACGACTCAATCTAACTCAGACGGCACGCCCACAGACCGTTCACCAACCGTCTGATGCATATTATGCACAAAACTGTCTCGATCTGGCAAACCTAATCTGATTGGCTGGCTTAACGCAACTTCCAAGAGAAATGACGCACTGGGTTTTATCTGTCCGACTGGAAACAAAGTCTTTGTTTACAAGGTACTGGGTTGATAAAACAAGCACTACTGAGGATGAAATAATTAGTGGAATTGTCAGCCAGGACACCACACGTGTGCCAGCCAGCCGGCGACATTGAAACAGAGACACCGTGTATGTGTGAAAGAGAGGAACAAAGACTCAGCAGATGGAGAGACAAACAGGAGAAGTGGAAAGATACAGAGAACACAAACGGATGATCTGACAGTAGAAAGAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU503190 True 627 lncRNA 0.45 2 927666 931002

Neighbor

gene id symbol gene type direction distance location
CI01000308_00750618_00755764 NA coding downstream 171186 749787 ~ 756480 (-)
CI01000308_00711286_00720426 NA coding downstream 206954 711216 ~ 720712 (-)
CI01000308_00529728_00530015 NA coding downstream 397521 529618 ~ 530145 (-)
CI01000308_00474123_00482394 NA coding downstream 444202 474064 ~ 483464 (-)
CI01000308_00110535_00111604 NA coding downstream 816008 109601 ~ 111658 (-)
CI01000308_01027964_01028971 GPR184 coding upstream 94843 1025845 ~ 1028971 (-)
CI01000308_01060962_01079388 PRKD2 coding upstream 129877 1060879 ~ 1079388 (-)
CI01000308_01085455_01103053 NA coding upstream 153945 1084947 ~ 1104480 (-)
CI01000308_01110508_01122419 STRN4 coding upstream 179469 1110471 ~ 1122932 (-)
CI01000308_01138943_01149474 SLC1A5 coding upstream 207580 1138582 ~ 1149735 (-)
G438352 NA non-coding downstream 93229 834171 ~ 834437 (-)
G438377 NA non-coding downstream 99582 827737 ~ 828084 (-)
G438309 NA non-coding downstream 110373 811455 ~ 817293 (-)
G438355 NA non-coding downstream 141365 768982 ~ 786301 (-)
G438344 NA non-coding downstream 179929 747522 ~ 747737 (-)
G438432 NA non-coding upstream 11126 942128 ~ 944000 (-)
G438434 NA non-coding upstream 18188 947556 ~ 957849 (-)
CI01000308_01176051_01177873 NA non-coding upstream 243562 1174564 ~ 1178142 (-)
G438460 NA non-coding upstream 309369 1240371 ~ 1241381 (-)
G438504 NA non-coding upstream 398945 1329947 ~ 1370881 (-)
G437635 NA other downstream 791981 135308 ~ 135685 (-)
G438671 NA other upstream 846593 1777595 ~ 1782581 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008353 NA non-coding NC_007126.7 CM002899.2 12059240 ~ 12362508 (+)