XLOC_012865


Basic Information

Item Value
gene id XLOC_012865
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 31280850 ~ 31459487 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027121
TGCCCACAGAGCACATTGCTCTTTGTATAAATCAtacttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATGATGAAGATCGCGACTCTGATGACGagcgcatac
>TCONS_00025674
TTTTAGTCACGTGACCCATTGTTTCAGATCAtacttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATGGGGTGAAGGCAGAGATCTTCTCTTCTGAAATCAAATCTCAAAATTCAGATCCCCCAATGGATCTGGGCTTGGCTGAAGATCACTTTTCTCGACCTGTGGGTTTGTTTGTGGCGTCTGATGTAGAGCAGCTGAAACTTGCCATAGAGGAGTGCAAGAGACTGATCCTGGAACTACCAGAGCATTCAGAGAAACAAAAAGATGCAGTGGTCAAGCTTATCCACCTTCGACTTAAACTACAAGAACTACAGGATCCCGAGGAAGATGAGCCCAACCTGCAGGTTATGTTAGAGCATCGCTTCTCAAAGGAGAAGAGCAAGAGTGTGAAACAGATGTGTGACAAGTGTAGCACCATTATATGGGGTCTCATTCAAACTTGGTATACCTGCACAGGTTGCTATTACCGCTGCCATAGCAAGTGCATGAGTCTTATCAACAAACCATGTGTGAGATCAAAGGTCAGCCATCAGTCTGAGTATGAACTCAACATCTGTCCTGAGATTGGTCTGGACAAACAAGACTACAGATGTTCTGAATGCCGGACACCCATTTCATTGCgTGGTATTCCTAATGAGGCACGTCAGTGTGATTATACCGGTCAGTATTACTGCAGCAGTTGCCACTGGAATGACACTGCCATCGTTCCAGCAAGAGTCATACACAACTGGGAGTTTGAACCCCGtaagGTGTGTCGTTCCTCAATGCGTTATCTTGCTTTAATGATGCCCAGGCCTGTGCTCAGACTGAAGGAGATTAATCCTCTGCTTTTCAACTTTGTGGAGGACCTGGTTGAGATCAGACTTCAAGACCGGCAGCACTTTGTGGAGAATGATGACATGTATAGCCTACAGGATCTGATTGACACTTCCAATGGACGTCTCAGCTGTTCCCTTACTGAAATTCACACAACTTTTGCCAAACATATTAAACTGGACTGTGAGaaatgcCAGGCCAAAGGATTCGTGTGTGAATTGTGTAAAGAGGGTGACAGTCTCTTTCCATTTGACAGCCACACCTCCGTTTGTCATGACTGCTTAGCAGTTTTCCACAGGGATTGTTACTATGATAACTCAACTATGTGTCCACATTGTGAGAGAATGCTGGAACACAAACTTGAGGTACCTTTGAAACTGTAGCAGAAGTGGGGCTGATCCCTGATGGATGTATGGCATACAAACACAGTGAAAGATCTTCTGAACGCATGTGGGTCTTGTCTCAGTTACTTTGTTTCTTCTCTTTATTTATTCTGAGATTTAAATCATGCATCTGTCAGCTATTGTGTGTCAGTGTTGATATTAATtcagtttc
>TCONS_00027122
ATCAtacttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAccccaatacagaaacagacgaagctctgtggaaaagcag
>TCONS_00025675
acttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATG
>TCONS_00025676
acttcggtgcagtgtttcgaacaCTTGCGCTTCTGGATCTCGATAACGAAACGCCAGTTTTGTGACAGCCATCCCTAAATAGTGGAATCCTTAACCTTAGAGGTCCCTATATGACACACCCACCAAGCAATCATCACAACGACTCTGAGCGGCGACTGCGGATCATATATTGAAGGACATGACAGAGGCCTGTTATTAGTTATGATTTATGGTGATAATGAAGAGATGAAGATGCGCTGCTAAGACTGCATAAAGAATGTGACCAGTGTCATGGAATATAATGAAAGACTTGCACGTTTTCGCCAAGGTCACGTCAACCCATTTGACAGGGATGAGATCGACAGCCAAACTGAGGGGAAGGATCCTCCTAAAGATGGGGTGAAGGCAGAGATCTTCTCTTCTGAAATCAAATCTCAAAATTCAGATCCCCCAATGGATCTGGGCTTGGCTGAAGATCACTTTTCTCGACCTGTGGGTTTGTTTGTGGCGTCTGATGTAGAGCAGCTGAAACTTGCCATAGAGGAGTGCAAGAGACTGATCCTGGAACTACCAGAGCATTCAGAGAAACAAAAAGATGCAGTGGTCAAGCTTATCCACCTTCGACTTAAACTACAAGAACTACAGGATCCCGAGGAAGATGAGCCCAACCTGCAGGTTATGTTAGAGCATCGCTTCTCAAAGGAGAAGAGCAAGAGTGTGAAACAGATGTGTGACAAGTGTAGCACCATTATATGGGGTCTCATTCAAACTTGGTATACCTGCACAGGTTGCTATTACCGCTGCCATAGCAAGTGCATGAGTCTTATCAACAAACCATGTGTGAGATCAAAGGTCAGCCATCAGTCTGAGTATGAACTCAACATCTGTCCTGAGATTGGTCTGGACAAACAAGACTACAGATGTTCTGAATGCCGGACACCCATTTCATTGCgTGGTATTCCTAATGAGGCACGTCAGTGTGATTATACCGGTCAGTATTACTGCAGCAGTTGCCACTGGAATGACACTGCCATCGTTCCAGCAAGAGTCATACACAACTGGGAGTTTGAACCCCGGATTGTTACTATGATAACTCAACTATGTGTCCACATTGTGAGAGAATGCTGGAACACAAACTTGAGGTACCTTTGAAACTGTAGCAGAAGTGGGGCTGATCCCTGATGGATGTATGGCATACAAACACAGTGAAAGATCTTCTGAACGCATGTGGGTCTTGTCTCAGTTACTTTGTTTCTTCTCTTTATTTATTCTGAGATTTAAATCATGCATCTGTCAGCTATTGTGTGTCAGTGTTGATATTAATtcagtttc
>TCONS_00025677
GTTGCTATTACCGCTGCCATAGCAAGTGCATGAGTCTTATCAACAAACCATGTGTGAGATCAAAGGTCAGCCATCAGTCTGAGTATGAACTCAACATCTGTCCTGAGATTGGTCTGGACAAACAAGACTACAGATGTTCTGAATGCCGGACACCCATTTCATTGCgTGGTATTCCTAATGAGGCACGTCAGTGTGATTATACCGGTCAGTATTACTGCAGCAGTTGCCACTGGAATGACACTGCCATCGTTCCAGCAAGAGTCATACACAACTGGGAGTTTGAACCCCG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0000380 alternative mRNA splicing, via spliceosome biological_process
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0048024 regulation of mRNA splicing, via spliceosome biological_process
GO:1903311 regulation of mRNA metabolic process biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0045292 mRNA cis splicing, via spliceosome biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071010 prespliceosome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0071004 U2-type prespliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-041114-96 Predicted to act upstream of or within intracellular signal transduction. Orthologous to human DEF8 (differentially expressed in FDCP 8 homolog).

Ensembl:

ensembl_id ENSDARG00000068208

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027121 False 444 lncRNA 0.45 4 31280850 31329150
TCONS_00025674 False 1713 mRNA 0.44 11 31280984 31459487
TCONS_00027122 False 300 lncRNA 0.45 2 31281011 31311166
TCONS_00025675 False 376 mRNA 0.45 2 31281016 31316309
TCONS_00025676 False 1311 mRNA 0.44 8 31281016 31459487
TCONS_00025677 True 289 mRNA 0.47 2 31410652 31411056

Neighbor

gene id symbol gene type direction distance location
XLOC_012864 tcf25 coding upstream 74192 31117136 ~ 31206658 (+)
XLOC_012863 NA coding upstream 205231 31073243 ~ 31075619 (+)
XLOC_012862 mvda coding upstream 212095 31056645 ~ 31068755 (+)
XLOC_012861 cd151l coding upstream 257403 30998472 ~ 31023447 (+)
XLOC_012860 mthfsd coding upstream 328568 30878196 ~ 30952282 (+)
XLOC_012866 NA coding downstream 60091 31519578 ~ 31521691 (+)
XLOC_012867 dhx36 coding downstream 151257 31610744 ~ 31837760 (+)
XLOC_012868 BX908763.1 coding downstream 386017 31845504 ~ 31846556 (+)
XLOC_012869 NA coding downstream 412534 31872021 ~ 31872676 (+)
XLOC_012870 NA coding downstream 539721 31999208 ~ 32002709 (+)
XLOC_012854 NA non-coding upstream 1149019 30129771 ~ 30131831 (+)
XLOC_012849 CT025546.2 non-coding upstream 2105642 29175093 ~ 29175208 (+)
XLOC_012845 CR769777.2 non-coding upstream 2976533 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 3544010 27736724 ~ 27736840 (+)
XLOC_012871 BX908386.1 non-coding downstream 558614 32018101 ~ 32023119 (+)

Expression


Co-expression Network