CI01000310_00415541_00454442 (PLCB1)


Basic Information

Item Value
gene id CI01000310_00415541_00454442
gene name PLCB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 415281 ~ 454442 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_00415541_00454442.mRNA
CTTCACGAGACTCAAGCTGCAGACCAATCAAGAGGGTCGCATCCCTGTGAAAAACATATTCCGCATTTTCTCAACTGACCGGAAGCGCGTGGAAACGGCACTGGAGAGCTGTAATCTTCCGTCCGGCCGGAATGACTCCATTCCTTTGGAGGATTTGACCCCTGACGTTTACAAATCGTTCATCAGCCATCTCTGCCCACGATCTGAGATTAACCAAATATTTGCTGATCTTGGCGCGAAGGGCAGAAACTTTCTCACCCTGGATCAGATGACGGAATTCATAAACAACAAACAGCGGGACCCTCGTCTGAACGAGATCTTGTACCCGCCGCTGAAGCCTGAACAAACCCAGAGCCTCATGGAGAAATTTGAGCCCAACCCAGGAATGATTCAAAAAGCAACAATAACTCCCGAGATGCAGTCCGACGCCGCAGTCAAGCCAGTTTATTTATATCTCTCAGAGCACAAGGCTCCACGGGCAAACTGGAGATCAGGGCAGATCTCAGTCGAGGGCTTCTCCAGGTATCTGATCAGTCAAGAGAACAGCGTCATTCCTGCAGAAAAACTGGACCAGAGTGAAGACATGACCTTCCCTCTCTCTCATTACTTCATCAACTCCTCCCACAACACCTACCTCACAGCGGGTCAGCTTGCGGGTAACTCCTCGGTGGAGATGTATCGGCAGACGCTGCTGTCTGGCTGCCGCTGTGTGGAGCTGGACTGCTGGAAGGGGCGTACGGCGGAGGAGGAACCCGTCATCACACACGGCTTCACCATGACCTCAGAAATCTCCTTCAAGGAAGTGATCGAAGCTATAGCGGAGTGCGCTTTCAAAACGTCTCCTTTCCCCGTCATCCTGTCCTTTGAGAATCATGTGGACTCCCCCAAACAGCAAGCCAAAATGGCAGAATATTGCAGATCGATATTCGGGGACGCACTTCTGACTGAGCCGCTTGAGAAATATCCTCTCGAGTCTGGAGTTCCTCTGCCAAGCCCTCAAGAGCTCATGGGAAAGATCCTCATCAAGAACAAGAAATCTCACCCGAAACCATCTGACGGGAGCACGAAGAAGAAGCTGTCCGAGCAGGTGTCCAACACCAACAGCGACTCGTCCAGCGTGTTTGAGCCTTCGTCACCCAGCGCTGGACCTGCAGAAACCAAGCGCAGTTATCAGATGTCATCGTTTGTGGAGACCAAAGCCCTGGAGCAGCTCACGAAGACACCGGTGGAGTTTGTAGAGCATCCTTTACCTGAGGAACTCCAGGATGAATACAACAAATTTCAGCTGAGCAGAATCTATCCCAAAGGAACTCGGGTGGATTCCTCCAACTACATGCCGCAGGTGTTCTGGAACGCCGGCTGTCAGCTTGTAGCACTCAACTTTCAGACCATCGATCTGTCCATGCAGCTGAACCTCGGCATGTACGAGTACAACGGGAAAAGTGGCTACAGGCTCAAACCAGAGTTCATGAGGCGACCGGACAAGCATTTCGACCCCTTCACAGAAAGCACAGTGGATGGGATTGTAGCCAATACCTTATCAGTAAAGATCATATCAGGACAGTTTCTGACTGACAAGAAGGTGGGCGTTTATGTGGAGATTGACATGTTTGGACTTCCAGTTGACACGAGACGAAAAGCTTTCAAGACAAAGACGTCCCAAAGCAACGCCATCAATCCTGTGTGGGACGAGGAGCCCATCGTCTTTAAAAAAGTTGTGTTGCCCACCCTCGCTTCCCTCAGGATAGCCGTGTTTGAAGAAGGAGGGAAGTTCATTGGTCATCGGATCATTCCCGTCTCAGCCATTCGTCCGGGTTATCGTTACATCGGTTTGAGAAATGAAAAGAATCAAGCTCTAATTCTTCCTGCTATATTCGTGTATATCGAGGTTATCGAGAAGCTGACCGGCATCGCTGAAGAAAGTCAAAGCAACCAAATGAAGAAAATCAAGGAGCTGTGTGAGAAGGAGAAGCTGGAAATCAACCGCTCTTATGTGAACGAGGTGGTGCAGCACATTAAGAGGCTGGAAGATGCTCAGACTAAAAGACATGAGAAGCTTGTAGAAACCCATAAAAGCATTCTGCAACAAATATTAGATGAGAAACCCAAGCTTCAGAATGACCTGGATCAGGAATACCAGGACAAATTCCGGCGGCTTCCATTGGAGATCCAGGAGTTTGTGCAGGAAAGCACCAAGAGAAAGACTGAGGATGTAGAGCAGGAAGTTCTTCCCTCTTCCTCCACGCTGGAGAAACTGATGCAGAAGGGCGCACAATCTGAAGACGACACAGAAGAGGAGAAGAAAGACTGATCGGACCATTTCAGAAACCTTCAGGATCTCTTCCCACTTCACTTTACGTTCTTTCATTTACATATTAGACATTTTTTGAAGGGTTGCGTTTGCTCCAGGAGATATCGACAGCTGACGAAGGAGAGCTCGTGGAAACGCTGCATCTGTATCACGCTGGGAGTTATTTTATTTCGGTTTGTTTAGTCTACTTGACTGGGTACATACTAAGGTTTAAATATGAATTATTTGTAATGTTCTGTTGATGTGCATCTCATAATAAT

Function

symbol description
plcb1 Enables several functions, including calmodulin binding activity; phosphatidylinositol phospholipase C activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in cytokine-mediated signaling pathway; phosphatidylinositol metabolic process; and positive regulation of JNK cascade. Located in cytoplasm and nuclear speck. Implicated in developmental and epileptic encephalopathy 12 and myelodysplastic syndrome. Biomarker of Alzheimer's disease; acute myeloid leukemia; and myelodysplastic syndrome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_00415541_00454442.mRNA True 2571 mRNA 0.49 20 415281 454442

Neighbor

gene id symbol gene type direction distance location
CI01000310_00369180_00401704 NA coding downstream 13419 368560 ~ 401862 (-)
CI01000310_00151988_00156136 TMEM151B, TMEM151BB coding downstream 259145 150614 ~ 156136 (-)
CI01000310_00083324_00113068 NA coding downstream 302175 81228 ~ 113106 (-)
CI01000310_00032999_00038804 NA coding downstream 376151 32950 ~ 39130 (-)
CI01000310_00593564_00595487 BMP2, BMP2A coding upstream 139084 593526 ~ 595937 (-)
CI01000310_00597640_00601450 GDF3 coding upstream 143063 597505 ~ 601575 (-)
CI01000310_00631552_00635392 CRLS1 coding upstream 176842 631284 ~ 635392 (-)
CI01000310_00637385_00645599 MCM8 coding upstream 182543 636985 ~ 645599 (-)
CI01000310_00762106_00777075 KCNK10B, KCNK10 coding upstream 307397 761839 ~ 777075 (-)
G438947 NA non-coding downstream 277663 137274 ~ 137618 (-)
G438946 NA non-coding downstream 278206 136617 ~ 137075 (-)
G438945 NA non-coding downstream 278803 136160 ~ 136478 (-)
G438859 NA non-coding downstream 336643 77762 ~ 78638 (-)
G439187 NA non-coding upstream 24143 478585 ~ 525679 (-)
G439197 NA non-coding upstream 54351 508793 ~ 509500 (-)
G439240 NA non-coding upstream 161056 615498 ~ 615756 (-)
G439244 NA non-coding upstream 167964 622406 ~ 622607 (-)
G439248 NA non-coding upstream 192922 647364 ~ 648163 (-)
G439012 NA other downstream 81227 332255 ~ 334054 (-)
G439398 NA other upstream 484693 939135 ~ 941564 (-)
G439473 NA other upstream 659918 1114360 ~ 1114833 (-)
G441306 NA other upstream 2372342 2826784 ~ 2827204 (-)
CI01000310_03135568_03137756 NA other upstream 2680190 3134632 ~ 3137756 (-)
CI01000310_03715435_03742324 NA other upstream 3283650 3715028 ~ 3742531 (-)

Expression


Co-expression Network