CI01000310_00653504_00679039


Basic Information

Item Value
gene id CI01000310_00653504_00679039
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 653504 ~ 679039 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_00653504_00679039.mRNA
GAGTTTCTAGCTGCTTTATATCTGTTTTACTGCCATGTAGTCAAGAATGAGGAATCACTGAAGTTGTTTATGAATGAAAGATATAACAGTTACAGTCGGGAAAACTCTCTGTATGATCTACTAACATCAGCAGTTGATAAATCCTTACAGAGTAAAAATGGACACCTTGATCTTTTCCTGCGGTTCCTGCTGGGCATCTCACTGGAGTCCAATCAGAGACTCTTACAGGATTTACTGACACACACAGAGAACAGCTCAGAACCCATCAGAGAAATCACACAGTACACTAAAGACCAAATCCAGGGTGATTATGAATGTCTCTCAGCTGAGAGAAGCATCAATCTGTTCCTCTGTCTGCTGGAAATGAAGGATCAGACTCTGTACAGAGAGATTCAGGGGTTTGTGAAGTCAGAGAATCACTCAGTGAATCGACTCTCTCCGTCTCAATGCTCAACAATCGCCTACATGTTTCAGATATCAGAGGAGGTGCTGGATGAGTTTGATCTGAAGAAATACAACACATCAGATGAGGGTAGAAGGAGACTGATACCAGCTGTGCTGAACTGCAGAAAAGCTATACTCGCTGACTGTAATCTCACTGATCAGTGCTGTGAAAGGTTGTCTTCATGTCTACAATCATCAAACTCTCTGAGAGAGCTGGACCTGAGTAACAATAACCTGCAGGATTCAGGAGTGAAGCTTCTCGCTGATGGACTGAAGAATTTACACTGTCAACTCAACATACTGAGAGTGAAAAGGATCAGATCAATGATGGCCTGTCTGACCTGCACTGACTCTGACTGTCAAACCCTCATCAAGAAGCATGACACAGAAGCCCTGCAGAGAGTCAAAGACCAACACAAAACTAGCATGAAGAACAAGTATGAGAGCTTATTTGAGGGAATCAAACTAGAAGAGAATCAAACCCTCCTGAACAGGATCTACACACAGCTCTACATCATAGAGGGAGAGAGTGAAGGGGTGAATGAAGAACATGAGGTTTTACAGATGGAGAAATCAGCCAGAACACAAGACACTCCAATCTACTGCAATGACATCTTTAAACACTTACATCAACCAGAATGTGAGGAGAAAGACAAAATCAAGACTGTTCTTACTAAAGGCATCGCTGGAATTGGAAAAACCGTCTCTGTGCAGAAGTTCATTCTGGATTGGACCGAGGGAAAAGCCAATCAGGATGTAGATTTCATGTTTGTGCTTCCATTTCGAGAGCTGAACTTGATTAAAGATCACCAGCACAGTCTTCACAGACTTCTGCTGGTCTTTCACCCTGAACTTCAAGATCTGGACTCAAAGATTTATGAGGAGTGTAAAGTTGTGTTCATCTTTGATGCCACTGTGCTTCAAAACCTCCTGAAACAAGGTGACAGTCCAGAAATCCCTCAAACTCTGACTGAAATGTACATCCACTTCCTGCTGACTCAGACCAACATGAAGAATCAGAAGTATGAAGAGAGAGATCCAGAGAAACTCCTGAAGTCCAACAGAGACGTGATTTTGAAACTGGCTGAACTGGCTTTCAAACAGCTGATGAAGGGCAATGTGATGTTCTATGAGGAGGACCTGACTGAGAGCGGCATAGACGTCACTGATGCCTCAGTGTATTCTGGGATTTGCACTGAGATCTTTAAGCAGGAATCTGTGATTCATCAGAGGAAAGTCTACAGCTTCATTCATCTGAGCTTTCAGGAGTTTCTAGCTGCTTTATATCTGTTTTACTGTCATGTATTTAAGAGCATGAATTCATTGAAAACACTGAAGTCCTTTCTGGGTATGTGGTCCAGGTTCACTGAAATCCCTCTCTATGATCTACTAAAATCAGCAGTTGATAAATACTTACAGAGTGAAAAAGGACACCTGGATCTTTTCCTGCGGTTCCTGCTGGGCGTCTCACTGGAGTCCAATCAGAGTCTCTTACAGGATCTACTGACACACACAGAGAACAGCTCAGAGAGTATCAAGAGAATCACACAGTACATTCAAGACAAAATCAGGGGTGATGAACGCCTCTCAGTTGACAGAAGCATCAATCTGTTCCTCTGTCTGCTGGAAATGAAGGATCAGACTCTGTACAGAGAGATTCAGGAGTTTGTGAAATCAAAGAATCACTCAGAGAATCGACTCTCTCCGTCTCACTGCTCAACAATAGCCTACATGCTTCAGATATCAGAGGAGCCGCTGGATGAGTTTGATCTGAAGAAATACAACACATCAGATGAGGGTAGAAGGAGACTGATACCAGCTGTGGTGTACTGCAGAAAAGCTCTACTTGCTGACTGTAATCTCAATGATCAGTGCTGTGAAAGTTTGTCTTCATGTCTACAATCATCAAACTCTCTGAGAGAGCTGGACCTGAGTCACAATGACCTGCAGGATTCAGGAGTGAAGCTTCTCGCTGATGGACTGAAGAATTTACACTGTCAACTCAACATACTGAGACCCCTGGTTCCAGATCAGTCCAC

Function

NR:

description
NOD-like receptor C, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_00653504_00679039.mRNA False 2483 mRNA 0.43 6 653504 679039

Neighbor

gene id symbol gene type direction distance location
CI01000310_00648731_00650082 NAPB coding upstream 3385 648566 ~ 650159 (+)
CI01000310_00629492_00629967 NA coding upstream 22672 629492 ~ 630832 (+)
CI01000310_00513998_00524767 HAO1 coding upstream 127898 513998 ~ 525606 (+)
CI01000310_00495852_00504711 NA coding upstream 148793 495852 ~ 504711 (+)
CI01000310_00298547_00317035 NA coding upstream 335149 298547 ~ 318355 (+)
CI01000310_00691123_00696889 NA coding downstream 12084 691123 ~ 697281 (+)
CI01000310_00717405_00718485 BDKRB2 coding downstream 38366 717405 ~ 718563 (+)
CI01000310_00721054_00727169 BDKRB1 coding downstream 41798 720837 ~ 729312 (+)
CI01000310_00738120_00739067 NA coding downstream 58879 737918 ~ 739815 (+)
CI01000310_00744256_00746991 NA coding downstream 64339 743378 ~ 747105 (+)
G439111 NA non-coding upstream 42763 610436 ~ 610741 (+)
G439072 NA non-coding upstream 153386 498773 ~ 500118 (+)
G439054 NA non-coding upstream 162981 426712 ~ 490523 (+)
G439052 NA non-coding upstream 234487 416616 ~ 419017 (+)
G438913 NA non-coding upstream 422135 229796 ~ 231369 (+)
G439135 NA non-coding downstream 20576 699615 ~ 699921 (+)
G439141 NA non-coding downstream 24609 703648 ~ 748971 (+)
G439134 NA non-coding downstream 36475 715514 ~ 746104 (+)
G439138 NA non-coding downstream 73231 752270 ~ 752679 (+)
G439148 NA non-coding downstream 77300 756339 ~ 756796 (+)
CI01000310_01207513_01226750 CDC5L other downstream 542967 1207057 ~ 1227194 (+)
CI01000310_01508712_01511125 FAM167A other downstream 822847 1508341 ~ 1513341 (+)
G439845 NA other downstream 1232562 1911601 ~ 1912417 (+)
G440505 NA other downstream 2420378 3099417 ~ 3136328 (+)

Expression


Co-expression Network