CI01000310_00784238_00790497


Basic Information

Item Value
gene id CI01000310_00784238_00790497
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 784238 ~ 791969 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_00784238_00790497.mRNA
ATGAGACTCCAGCCAGAGTTTCTCATCATGGACACTAAACCAGGGTACTGTCTTGGTTCATCTGGCAAACTGATGAATCAGTACATGATTAAAGACCACATGCTGTCACATTACAGAAAGCTGTATTCAGCTAAAGCTGCTGTGGACTGTTCAGCACCTAAAAGCATGCAGAGCAATGTCAAATATGTTGATCAGAAGCGTCGTGAGCAGTTAAGGAAAGACACTCGGAGTCGGTCGAGAAGATCCGATTCCCAGAGGAGCACGAGGATAAACTCAAGAACTTCCTGCTCTACTAAAAATAGCAGACCATCGGTTCAGGGTGACGAGAGTGCCTATCATTACCTGGAGCAATCGCTGATGTCATCACCCAGGATCAGCACCTCGTTTCATTGCAAACAAATTGTATATCCCTCCCAAACATCTGGAACCTCTGCGAACCACTTCCGATCTGCCTCCGAGTTGAGTTACCGAAGCCCAAACCCTCACTGGCAGGACGCGGGTCCGTCCTGTGCCACGTCTGCCAGTCAGAGAGGGTACAAGAGCTTTCAGGATCCCACGCAGAAGACCTACAGCGGTGACGTACTGCTGAAACACGCTCATCGCTTCACTCCAGAGAAACCCTTCACCCCGAGAACGCTGAAATCAGACCACAAGTCCACGCTGTTACAATACCGATATTACACTCCTTCACGGAGGAAAGTGGAAGAGGAGAAATCGTCCTCTGTTATTCGCCAGGAGACGCGCCACGGGAGCACACGGTCCAAACGAGGCTGTTCTCCACCGCTCGAGTCGCTCCAGGCAAGTTTGAAGGAAACGTGTGGGTCGTTCTGCAAAATAAACATCATAATGTCACTTTATACATTAACTCTTGATCACGAGTGGTCTGATGGAGAAACAGATTCATTTAGACATCATGGCAAGACAAACCGGTTTAAGAACAGTGATTTTCTTCTCTCGTCCTCCAGGGTTTCACCAGAAGGCATGAGATCCCCCATAATGAGAAAAGTTTCAGCAGAGGAGGAAGAATTGATGTACCTGGAGTTCATTACAGACGTGACGAATGAGATCCTGACACAGGGCCTGTACTCTGACAGGGTGCTGAAGAGAGTGTTTGAACGGCACATTGACATGAACAGACATCGATTAGACGAGAACAAAATGCGGCACCTTCTAGACAATCTGCAGAAAGACCTGCAAAGTCCTCCTGCGGCCTCCATCACGTCTCTGGGTGCAGGAAAATCCGATAATCCTTTGAAACGGCTGCTGTCACATGATGTTGATTATCTTCTCCATGACGTGTTTAACGAGGAGCGAGGACAGACGGAGGACGTCACTCCTGCTGCAGCGTCCACACCTGTGAACCTCAGCCTGGACGTGACGTTTAATCACATCCTCCTGAATGATGATGAACATCTCACCTGTGCTGTGGAAAATCCCTGGAACGCTGAAGTGTTAGAACAGGTTGATGAACTTGGGAAAATCATGGCGGAGTCGTTAAGTGTGTCAGAGACGCCGAAGGAAGTGTTTGAACAGGAGCAGACGAGAGGTGACGTCAGTGATGATGAGTTCTAATCAAATCTAATCTGCAAAAACACAAAGATTTTTCTTTGTGATGCTGTAACTGTTTCTGCAGAATTTCAGATTTTCTTTTTTGTTTACTTTTTTTAGTGTTATGAAAGTGAGTTTTCCAGGAACTGATAGTTCTCCCAAGCCATTCCAGTATTTTCAGCATGTTATGTGCGGTGTTCAGTACTTTTTTCTGAATTATTCCGCTCCTAATGTGGCCGTTTATTGTTTATGTAGTCGGGTTAAGATTCAGAGCTCATGCTGTGACGTTTATCTGAGTGTTTTAGTTTGTAAAGCTGCAGTGTTCATATTCTCTGATATACTTGATACAGAAGATTATTATTTCAACTTTTATTTAAGCTTTTGAAAGACATCCACCTTTAGAGCTTTTGTATTTGTTACAGACACACACACACATACTCTCTCTCACTCACTCACTTACACACACACACACACACACACACACTCTCTCTCACTCACTTACACACACACACTCTCTCTCTCACACACACACACACATACTCACACACACTTAATCTCTCATGCACTCACACACACTCACTCTCACACACATACTCACACACACACTTTTACACACTCACTCTCTCACGCACACACACACACTCTCATACACACACGCACACACACTCACTCTCACACGCACAAGCTTTCTCACACACACACAACTTCACACACACAAATACTCACTCACACTCAAATACACACTCTCTCACACACACTCTCTCTCTCTCTCTCACACACACACACACACACACTCACTCTCTCTCACACACACACACATACTCTCATACACACATGCACTCACTCTCACATGCACAAGCTCTTTCTCACACACACACCTCACACACACAAATACTCACACACACTCACACACAAATACACTCTCTCACACTCACTCATACACACACTTTCACACACACACACACACTTACATGCACACTCATTCAGACACACACTGACTCACTCGCTCTCTCTCACACACACAAGTGCACACTCTCTCACTCACACATTCTCTCTCTCTCTCACACACACACTTACATGCACTCATTCAGACACACACTGACTCACTCACTTGCTCTCTCTCTCTCTCACACACACACACACACACACTTACATGCACTCATTCAGACACACACTGACTCACTCACTTGCTCTCTCTCTCACACACACACACACACACACTCACTCACTCACTCTCTCTCATACACACACTCAAAATAAAAAAATATATAAATATATGTTTAATTATTGGACAATTGAAAAACTATTAAAAGCCTATTAAGGAAACCATCAATAACGAGAGGTCAACATTTGTTTTAGTTTACGATGCACATAAAAAATTTAAAATTGCAGTATTAATTTAAAATGCTTTAGTAAACATA
>TU504214
ACTTACATGCACTCATTCAGACACACACTGACTCACTCACTTGCTCTCTCTCTCTCTCACACACACACACACACACACTTACATGCACTCATTCAGACACACACTGACTCACTCACTTGCTCTCTCTCTCACACACACACACACACACACTCACTCACTCACTCTCTCTCATACACACACTCAAAATAAAAAAATATATAAATATATGTTTAATTATTGGACAATTGAAAAACTATTAAAAGCCTATTAAGGAAACCATCAATAACGAGAGGTCAACATTTGTTTTAGTTTACGATGCACATAAAAAATTTAAAATTGCAGTATTAATTTAAAATGCTTTAGTAAACATAATAAAGCTGTCTTTAAAGTGACCACGAGTGTCTTAAACAGTTGTGTGTACTTTGAATACTTGTTACACTGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_00784238_00790497.mRNA False 2969 mRNA 0.44 11 784238 791894
TU504214 True 425 lncRNA 0.34 1 791545 791969

Neighbor

gene id symbol gene type direction distance location
CI01000310_00744256_00746991 NA coding upstream 37133 743378 ~ 747105 (+)
CI01000310_00738120_00739067 NA coding upstream 44423 737918 ~ 739815 (+)
CI01000310_00721054_00727169 BDKRB1 coding upstream 54926 720837 ~ 729312 (+)
CI01000310_00717405_00718485 BDKRB2 coding upstream 65675 717405 ~ 718563 (+)
CI01000310_00691123_00696889 NA coding upstream 86957 691123 ~ 697281 (+)
CI01000310_00861939_01046631 KLHL29 coding downstream 70045 861939 ~ 1046631 (+)
CI01000310_01103452_01164843 NA coding downstream 309983 1101821 ~ 1164974 (+)
CI01000310_01196439_01199290 NA coding downstream 403806 1195700 ~ 1199377 (+)
CI01000310_01207513_01226750 CDC5L coding downstream 415163 1207057 ~ 1227194 (+)
CI01000310_01257447_01269508 NA coding downstream 465433 1257327 ~ 1270033 (+)
G439148 NA non-coding upstream 27442 756339 ~ 756796 (+)
G439138 NA non-coding upstream 31559 752270 ~ 752679 (+)
G439141 NA non-coding upstream 35267 703648 ~ 748971 (+)
G439134 NA non-coding upstream 38134 715514 ~ 746104 (+)
G439135 NA non-coding upstream 84317 699615 ~ 699921 (+)
G439289 NA non-coding downstream 779 792673 ~ 794492 (+)
G439298 NA non-coding downstream 128374 920268 ~ 923911 (+)
G439300 NA non-coding downstream 263653 1055547 ~ 1056332 (+)
G439457 NA non-coding downstream 303192 1095086 ~ 1095662 (+)
G439456 NA non-coding downstream 304261 1096155 ~ 1096516 (+)
G439115 NA other upstream 93046 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 134685 648566 ~ 650159 (+)
CI01000310_01508712_01511125 FAM167A other downstream 709992 1508341 ~ 1513341 (+)
G439845 NA other downstream 1119707 1911601 ~ 1912417 (+)
G440505 NA other downstream 2307523 3099417 ~ 3136328 (+)

Expression


Co-expression Network