CI01000310_01207513_01226750 (CDC5L)


Basic Information

Item Value
gene id CI01000310_01207513_01226750
gene name CDC5L
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1207057 ~ 1227194 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01207513_01226750.mRNA
ACATAAAAAGCATAGGCTACTTTTTCACAAAGTTTCAGTTTATTTATAAAGCACAATTAAAATTACACCGTTTACTAATGTACGGTACAATGCCATATAACCAAAACTATATAACAAAATAAACGGAGAAAACAAATATGATTAAAACAAATGTAATACAAACGATAATATTCGGTGTGAACGCACAATTTGTTGAGCATGCCATTCGCCTCTCTGACCTGAGGGGCGTTATTGAGTTCAAGAGACATGACAGAGCACGTATGAATCAATAGAAGAAGAGCCTGATTCCCACAGTTCTGTGCGTTCGCAGCCATTTCGGTTTCCTCATCTGCAGTTTAACGTGCTGCAGCGTAAATTCAAAGTTTATTTGTCTTATTTTATTTTAATTTCACATATTTTAGGTTCCAGAACAAGATTTTACTGCGCGAGCGAGTGTGAAGACTTTAAATCGCCAACATGCCGCGGATTATGATTAAAGGAGGCGTGTGGCGCAACACTGAGGATGAAATTCTCAAAGCAGCTGTAATGAAATATGGCAAAAATCAGTGGTCTCGAATTGCATCCCTGCTGCACCGCAAATCAGCCAAACAGTGTAAAGCCAGATGGTATGAGTGGCTGGATCCTAGCATTAAGAAAACAGAATGGTCACGTGAGGAAGAGGAGAAACTTCTTCACTTGGCCAAACTGATGCCCACTCAGTGGAGAACAATCGCCCCCATCATTGGACGAACGGCCGCTCAGTGTCTGGAGCATTATGAATATTTGCTAGATAAAGCCGCTCAGAGAGAGAATGAAGATGATGTGGGCGATGACCCTCGCAAACTGAAACCAGGAGAGATCGACCCAAACCCTGAGACCAAACCAGCCAGACCTGACCCTGTGGATATGGATGAAGATGAGCTGGAGATGCTGTCTGAAGCCAGAGCTAGATTGGCCAACACACAAGGCAAGAAGGCAAAGCGGAAGGCCAGAGAGAAACAGCTGGAGGAAGCGCGTCGTCTGGCAGCACTTCAGAAGCGCAGGGAGCTGCGAGCTGCAGGCATTGACATCCAGAAGAAGCGCAAGAAGAAGAGAGGTGTAGACTATAATGCTGAGATCCCGTTTGAAAAGAAACCCGCACAGGGTTTCTACGATACGTCCATGGAGCTGTATGATCCTTTGGAACCTGACTTCAAACGACTGCGCCAGCAGCATCTGGATGGAGAACTCAGGAGTGAGAAGGAGGATCGTGACCGAAAGAAGGACAGACAAAAGATCAAAAAGAAGAAGGAGTCAGATTTGCCTTCGGCCATCCTGCAGACCAGTGGGGTGTCAGAGTTCACAAAGAAGAGAAGCAAACTGGTTCTTCCGGCACCACAGATCTCTGATGCTGAGCTGGAGGAGGTTGTCAAGCTGGGTCAGGCCAGCGAAGTCGCCCGTCAGACTGCCGAGGAGTCTGGAATCACTAACTCGGCCTCCAGCGCTCTTCTGTCTGAATACAACGTGACCAATAACTCCATGGCCCTGCGCACACCCAGAACTCCAGCGGCACAGGACAAGATCCTGCAGGAAGCCCAGAACCTGATGGCACTTACGAATGTGGACACCCCTCTTAAAGGAGGGCTGAATACCCCTCTCCATGAGAGTGACTTCTCTGGTGTCACACCACAGAGACAGGTGGTCCAGACTCCCAACACCGTGCTGTCTACACCCTTCAGAACCCCTGGCCATGGAGCCGAGGGCATGACCCCACAGGGTGGAATGACCCCTAAACCCTTGGTGGGTGTGACCCCGGGTAGGACCCCGCTGCGGGACAAACTCAACATCAACACAGAGGAGGGTAGTGTGGACTACAGCGACCCATCTTTTGCGAAACACTTGCAAAGGGAGTCCCGCGAGCAGCTCAAGTTGGGCTTGATGTCTCTGCCGGTGCCAAAAAATGATTTTGAGATTGTTCTTCCTGAAAACGCTGAGAAAGAACTGGAGGAAGCCGAGGTGGACGAGAGTTTCGTGGAGGATGCGGCCGAGATAGAACTGCGTAAACAGGCCGCCAGAGATGCTGAGAGGGAGAAGGAGCTGCGTCAGAGACACACACCAGTTCAGAGAGATTTACCAAGACCTTCAGAGATCAACAGAGGCCACATGACCACAGAGGCCAAGCGTGCGGCGAAGATGGAGAAGAAGATGAAGATTCTTTTGGGTGGTTATCAGTCTCGGGCCATGGGTCTGCTCAAACAGCTCAGTGAACTCTGGGATCAGGTAGAACAGGCCAACGTGGAGCTCCACACCTTCCAGGAGCTAAAGAAACAGGAAGACCACGCCATTCCACGCAGACAGGAGGCCCTGAGAGAGGATGTTCAGAGGCAACAGGACAGAGAAAAAGAGCTGCAGCAGAGATTCGCAGACCTGCTCCTGGAGAAACAGACGCTCTCGCAGAAGTTTTGAGTGGGACGTTCATCTTCAACATCTCTGCATCTCCTGTAGTCAGTACAGTAGCTGTGTGTGCTAATCCTAAAGTCTAGCCTTACCATTCCGCTTCAGTGTGCACATCAGCATGTTTTATATCTTTACTGTGTGGATCCTTCTCTTTCTGCTGTAATGAACTGCTTTCAGCTTCTTAATTTTGAGTTTGAGATTCACCTGCTGCTCACAAGGAACACCAGGATTTAATTCACAGATTTGTTTTTAAAAATGTTTTTCATCTTACTTGTGCAAATGCAACCTTGTAAGTGTAAATATCGTCTGTTTTCTGTTATGTTTTTCCCATGTCAAGCCATTTTTAGGTTTGTTCTGAATATAAGAAACTTTTGCTCCTTTTCATGTGTAAATTGGAATGACTGGCATTGAAAATGTACATCATTTACAAA

Function

symbol description
cdc5l Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within RNA splicing; cell division; and mRNA processing. Predicted to be part of Prp19 complex and spliceosomal complex. Human ortholog(s) of this gene implicated in osteosarcoma. Orthologous to human CDC5L (cell division cycle 5 like).

GO:

id name namespace
GO:1990090 cellular response to nerve growth factor stimulus biological_process

KEGG:

id description
K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01207513_01226750.mRNA False 2846 mRNA 0.48 14 1207057 1227172

Neighbor

gene id symbol gene type direction distance location
CI01000310_01196439_01199290 NA coding upstream 7680 1195700 ~ 1199377 (+)
CI01000310_01103452_01164843 NA coding upstream 42083 1101821 ~ 1164974 (+)
CI01000310_00861939_01046631 KLHL29 coding upstream 160426 861939 ~ 1046631 (+)
CI01000310_00784238_00790497 NA coding upstream 415163 784238 ~ 791969 (+)
CI01000310_00744256_00746991 NA coding upstream 459952 743378 ~ 747105 (+)
CI01000310_01257447_01269508 NA coding downstream 30155 1257327 ~ 1270033 (+)
CI01000310_01394296_01394727 NA coding downstream 165917 1393089 ~ 1394908 (+)
CI01000310_01411744_01412226 NA coding downstream 184572 1411744 ~ 1412467 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding downstream 187153 1414325 ~ 1452698 (+)
CI01000310_01508712_01511125 FAM167A coding downstream 281540 1508341 ~ 1513341 (+)
G439541 NA non-coding upstream 8987 1197604 ~ 1198070 (+)
G439519 NA non-coding upstream 43901 1162939 ~ 1163156 (+)
G439511 NA non-coding upstream 51294 1155294 ~ 1155763 (+)
G439507 NA non-coding upstream 56037 1150740 ~ 1151020 (+)
G439505 NA non-coding upstream 58101 1148611 ~ 1148956 (+)
G439565 NA non-coding downstream 34174 1261346 ~ 1261761 (+)
G439628 NA non-coding downstream 130726 1357898 ~ 1367503 (+)
G439631 NA non-coding downstream 138459 1365631 ~ 1366429 (+)
G439657 NA non-coding downstream 180535 1407707 ~ 1410605 (+)
G439679 NA non-coding downstream 295566 1522738 ~ 1523826 (+)
G439115 NA other upstream 515865 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 557504 648566 ~ 650159 (+)
G439845 NA other downstream 684429 1911601 ~ 1912417 (+)
G440505 NA other downstream 1872245 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_011203 cdc5l coding NC_007128.7 CM002901.2 5061135 ~ 5105922 (+)