CI01000310_01394296_01394727


Basic Information

Item Value
gene id CI01000310_01394296_01394727
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1393089 ~ 1394908 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01394296_01394727.mRNA
ATATAAAAACACACTAACCAGAACATAATCACCATGTGCCATTAGGACTAAATCATTTATGTGGGTTAATCAAGTGCTTCTCAATTGGTTTTGCTTCAGGACCCAGATTTTATATTGGACATCAAGTGGTGACCACAATTAAGTAACCAAAGCGTCAAACTTAAAATCAAACACAAAAGTTATTAATAATAACGACATTGACTGCATGTGCCTAATAATATGTGAAATCATTAAAGGGTTAGTTCACCCAAAAATGAAATTAATAGTCATTAATTATTCACCCTCATGTCATTCCACACCCCTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTTATGAAATCCGTGAGGTTTTTTTTTTTTTCATCCCCCATATAAAGCAATATAATACAAGGTCCAGAAAAGTAGTAAAAACATCATTAAAATAGTCAACGTGACTACAGTGGTTCAACCTTAATATTATGAAGCGACAAGAAAACATTTTGTGTGCAAAAACAAAACAAAAATAACGACTTTATTCAACAATTTCTTCTCTTCCGTGTCATTCTCCTACGCTGCTTACGTTGTATAGACAATGCAGGCTTCGTGTTCTACATCAGAACGCCGACTCATTATTTTTGCACACAAAAAGTTCTCATCACTTCAGAACATTAAGGTTGAACCACTACAGTCACGTTGACTATTTTAACGATATATTTACCATTTGTCTGGACCTTGAATGTGGTAATTACATTGCTTTCTATGGGGTAGAAAAAAACCTCTCAGATTTCATCAAAAATATCTTTCTTTGTGTTTCGAAGATGAACGAAGGTCTTACGGGTGTGGAACGACATGAGGGTGAGTAATTAATAACAGAAATTTCTGGGTGAACTTTTAATTACAGAATTACAGAAATTGACTTATTTTGTGAATGCCTAAACAACAACAGAAATTATTATCCAGGCAGAAATGTAAAACAAACAGTGGGATAATGTATTAGTTTGGCAATTATACAATCAAATTTGCACCAAAAAAAAAAAAAAAAAAAAAAATCTATATTAAGCACTATTACATGGTTAGTTGCATTTGATTATTTGCGTTTAGCACAATTTTTCCCTGTGACCCAGCAGTTAACGGATGCCTTGCATGGAGCTTTAACCTCCTGACAATGGGACACGGTCTAAATGAAATCAATGAGCAATTATCAGCGTGCCGCAAATGGGCCGAGAACGATTTTTAGAGAAGTTGAGACTCCAAACACGAGGCATGATAAAACTCAGAGGAGAAAAACAGTCATTAAGAATTAACCCCACAACTAAGCACGTTGTCAACAACACTGTTTTTCTGATTGGAACGGCTGTTGACTCATCCTCTGACGGCAGTCGGCAGGCTGCTATAGTTACTGAACTAGACATCATGGCTCCTGTTTCATTGTCTCGTGTGTTCACTGCGAGCACAAAACTACTTGTAAAGGTGTTTCAGTATATCACTGAATCCTTTGGGGAAATAACAGCCACTCAGTGGAGTATAAAGGCCAGGCCTTATGTAAAATTAATCAGAAAGACTCCCTCACCGAGGTTGACACTGTCTATTAAAACGTTCCTCCTTGCTGTTAAATATGCATTAGACGTCCAAAGGCGAATCTCCTAAGAAGTTGTTTTCCACTGAAAAATGAGGAGTTTGATACACTTGGAGAGGTTTGAAAGCAACGTGAAAAACCCGGAGCTTTCCATGGACTTCAGAGTTCAAGCTGTCATTTCGCTGACAAAGACAACAAGAGATCTCTCTCGACATTCTCACGACGTCTAAATATTAACAAGGCATCTTATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01394296_01394727.mRNA True 1820 mRNA 0.37 1 1393089 1394908

Neighbor

gene id symbol gene type direction distance location
CI01000310_01257447_01269508 NA coding upstream 123056 1257327 ~ 1270033 (+)
CI01000310_01207513_01226750 CDC5L coding upstream 165917 1207057 ~ 1227194 (+)
CI01000310_01196439_01199290 NA coding upstream 193712 1195700 ~ 1199377 (+)
CI01000310_01103452_01164843 NA coding upstream 228115 1101821 ~ 1164974 (+)
CI01000310_00861939_01046631 KLHL29 coding upstream 346458 861939 ~ 1046631 (+)
CI01000310_01411744_01412226 NA coding downstream 16836 1411744 ~ 1412467 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding downstream 19417 1414325 ~ 1452698 (+)
CI01000310_01508712_01511125 FAM167A coding downstream 113804 1508341 ~ 1513341 (+)
CI01000310_01513690_01517791 NA coding downstream 118782 1513690 ~ 1518229 (+)
CI01000310_01564875_01571307 TDH coding downstream 169967 1564875 ~ 1572028 (+)
G439628 NA non-coding upstream 25586 1357898 ~ 1367503 (+)
G439631 NA non-coding upstream 26660 1365631 ~ 1366429 (+)
G439565 NA non-coding upstream 131328 1261346 ~ 1261761 (+)
G439541 NA non-coding upstream 195019 1197604 ~ 1198070 (+)
G439519 NA non-coding upstream 229933 1162939 ~ 1163156 (+)
G439657 NA non-coding downstream 12799 1407707 ~ 1410605 (+)
G439679 NA non-coding downstream 127830 1522738 ~ 1523826 (+)
G439704 NA non-coding downstream 167413 1562321 ~ 1562554 (+)
G439721 NA non-coding downstream 208989 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 209943 1604851 ~ 1605069 (+)
G439115 NA other upstream 701897 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 743536 648566 ~ 650159 (+)
G439845 NA other downstream 516693 1911601 ~ 1912417 (+)
G440505 NA other downstream 1704509 3099417 ~ 3136328 (+)

Expression


Co-expression Network