CI01000310_01564875_01571307 (TDH)


Basic Information

Item Value
gene id CI01000310_01564875_01571307
gene name TDH
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 1564875 ~ 1572028 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_01564875_01571307.mRNA
ATGCGGTCCTGTGTAAGAGCTCTGAGTGGGGCGGTGCAGCGGGTTCTCCTGGCTCCAGTCTGCGGCTTTCAGCCTCTCGCTGTTGTAGCTCGCAGTGTCAGTTTCTCTCCGTGCCAAGTCACATCCAATGCCAGTTTTCACTCAGTGTCCTCTGGATCGGATCATCCCAGAGTTCTCATTACCGGGGGTCTGGGTCAGCTGGGAGTGGGTCTAGCCAAACTGCTCAGGATGCAGTTTGGAAAATATAATGTAATTCTGTCTGATATCAGGAAACCCCCAAATCATGTTTACCAAAGCGGTCCTTTTATATATTCCGACATTTTGGACTACAAAAACTTGCGTGAGATTGTTGTAAACAACCGCATCACTTGGTTGATACATTACAGCGCCGTTCTGAGTGCAGTCGGAGAGGCCAATGTGTCACTCGCTCGTGACGTCAACATCACTGGGTTGCACAACGTTCTTGACATTGCCGTCGAACATGGGCTCCGTCTTTTCATCCCCAGTACTATTGGAGCCTTTGGCTCCTCCTCCCCTCGTAACCCCACCCCTGATCTGTGCATCCAACGACCACGAACCATTTACGGAGTGTCCAAGGTTCACACTGAGCTAATGGGAGAGTATTACCATCACAGGTTTGGTCTTGACTTCCGCTGTCTCAGATACCCAGGAATCATTTCTGCAGACTCTCAACCTGGTGGAGGAACTACAGACTATGCTGTCCAGATATTCTACGATGCTGTGAAAACGAGTAAATTTGTGTGCAATCTGAGGCCTGACACAAGACTCCCCATGATGTTCATTGATGACTGTCTGAGAGCCACACTGGAGGTTCTGGAAGCCCCTGCTGAGATACTCAGTATGCGCACATACAATATCAGCGCCATGAGCTTCACTCCAGAGGAGCTGGTACGAGAAATCAGGAGGCACCTGCCAGACCTGCAGGTCACATATAAGATTGACCCAGTTCGACAGGCCATTGCTGACAGCTGGCCCATGATCTTGGATGACGCCAGTGCCCGCAGTGACTGGGGCTGGAAGCACGACTATGGTTTGCCAGAGCTGGTTCAGACGATGCTTAACTTCACTGGATCAGACTCCAGAATGTCTCAAGCAAACTAAGCACCATCTGCTATTATGTGTTTGAGGTTTTTAGGACCTAATGGAAGGGATGGTAATTGGGCCCTGTAGTGCACTAAGATTAATGAAGGTCAAACTTTCTGCCTTTTTCCATATGTAGCATGTATTTGCACAGTTTTTCCTGGTAAAGTAAAGATAAACCAAAGATTTACAGGGTTCAATTATATAAGCTTTAAATTTGTCTTGTGAACTATTTGTTCTGTAGCAGGCAGTGTGAAATAATTAGCTTTGGTTCTGTTATCAGTGAATATACTGAACTCGGAACAATACATTCTTTATTTGCTTTGCTAGAATGATTTACACTACCGTTATTTTTTAAATTTTTTTTGGGTTCAGTAAGATTTTTTTTAATTATATTTTAAAAGAAATGAAGGCTTTCATTCAGAAAGGACACATTAAATTGATAAATTGTGACATTCATAATGTTGCAAAAAATAAAAAAAATAAAAATGCTGTTCTTTTGAACTTTCTAATCATCAAAACATTGATAATAATGAAATGTTTATTGAGCAGCAAATCAGCATAAAACTTGGTGAGCATAAGGGACTTCTTTGAAAAACATAAAAATTGTACTGACCCCAAACTTTTGAACGGTAGTGTATACTTATGAGATATTGTGTGCTTGTGTGAAAGAAATGTAATATCATAGTATAAAATGATAGTCATAATTATGGTGCTATTTCTAAAGGGCTTCTTAGTTTTA

Function

symbol description
tdh Predicted to enable L-threonine 3-dehydrogenase activity. Predicted to be involved in threonine catabolic process. Is expressed in several structures, including immature eye; mucus secreting cell; nervous system; neural rod; and pancreas. Orthologous to human TDH (L-threonine dehydrogenase (pseudogene)).

NR:

description
mitochondrial l-threonine 3-dehydrogenase

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15789 TDH; threonine 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_01564875_01571307.mRNA True 1843 mRNA 0.43 8 1564875 1572028

Neighbor

gene id symbol gene type direction distance location
CI01000310_01513690_01517791 NA coding upstream 46646 1513690 ~ 1518229 (+)
CI01000310_01508712_01511125 FAM167A coding upstream 53750 1508341 ~ 1513341 (+)
CI01000310_01414325_01452698 RUNX2, RUNX2A coding upstream 112177 1414325 ~ 1452698 (+)
CI01000310_01411744_01412226 NA coding upstream 152408 1411744 ~ 1412467 (+)
CI01000310_01394296_01394727 NA coding upstream 169967 1393089 ~ 1394908 (+)
CI01000310_01588365_01597469 NA coding downstream 14464 1586492 ~ 1597486 (+)
CI01000310_01638700_01644396 FNDC4B coding downstream 66672 1638700 ~ 1644598 (+)
CI01000310_01663192_01666886 NA coding downstream 91164 1663192 ~ 1667160 (+)
CI01000310_01674884_01675180 NA coding downstream 102216 1674244 ~ 1675265 (+)
CI01000310_01693209_01696414 NA coding downstream 120701 1692729 ~ 1696871 (+)
G439704 NA non-coding upstream 2321 1562321 ~ 1562554 (+)
G439679 NA non-coding upstream 41049 1522738 ~ 1523826 (+)
G439657 NA non-coding upstream 154270 1407707 ~ 1410605 (+)
G439628 NA non-coding upstream 197372 1357898 ~ 1367503 (+)
G439631 NA non-coding upstream 198446 1365631 ~ 1366429 (+)
G439721 NA non-coding downstream 31869 1603897 ~ 1604107 (+)
G439723 NA non-coding downstream 32823 1604851 ~ 1605069 (+)
G439741 NA non-coding downstream 78984 1651012 ~ 1651387 (+)
G439697 NA non-coding downstream 98854 1670882 ~ 1673466 (+)
G439759 NA non-coding downstream 189364 1761392 ~ 1770560 (+)
CI01000310_01207513_01226750 CDC5L other upstream 325470 1207057 ~ 1227194 (+)
G439115 NA other upstream 873683 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 915322 648566 ~ 650159 (+)
G439845 NA other downstream 339573 1911601 ~ 1912417 (+)
G440505 NA other downstream 1527389 3099417 ~ 3136328 (+)

Expression


Co-expression Network