CI01000310_02793777_02805490 (TULP4)


Basic Information

Item Value
gene id CI01000310_02793777_02805490
gene name TULP4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 2793777 ~ 2807092 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000310_02793777_02805490.mRNA
ATGTCCAGGGACTATGAAGAGCCTGGTCAGTCTGTAGGGATGTTGGCTGCGGTGGAACATGGTCCGGTCCTCTGCAGTGACTCCAACATCCTCTGCCTCTCATGGAAAGGGCGAGTTCCCAAGAGTGAGAAGGAGAAGCCGGTGTGCAGGAGGCGCTACTATGAGGAGGGCTGGCTTGCCACTGGAAACGCCAGGGGTGTTGTGGGCGTGACATTCACGTCTAGTCACTGCAGAAGGGACAGAAATACCCCACAAAGAATCAACTTCAATTTACGGGGTCATAACAGTGAGGTTGTCCTTGTTAGGTGGAATGAACCATTTCAGAAGCTTGCAACGTGTGACATGGAGGGAGGGATATTTGTGTGGATCCAGTATGAAGGAAGATGGTCTGTAGAGCTGGTGAATGACAGAGGTGCTCAGGTGAGTGACTTCACCTGGTCACATGATGGTACACAGGCCTTGATCGCCTACAGGGATGGTTTTGTCCTGGTGGGCTCAGTCAGCGGTCAGAGACACTGGTCATCTGAGATCAATTTGGAGAGCCAGATCACCTGTGGAATCTGGACCCCTGATGACCAGCAGGTGCTTTTTGGAACAGCAGACGGGCAAGTCATAGTTATGGACTGCCACGGCCGTATGCTTGCCCATGTTCTGCTGCATGAGTCAGATGGCATAGTCAGCATGTCCTGGAACTGCCCGAACTTCCTGGTGGAGGACAGCACTGAGAGCGACACAGACTCTGATGACTCTACTCCAGCTCAAGTGCAAAATCTCAAACCACTGCTAACGGTCAGCTTCATATCGGGAGACATTAGTTTGATGAACAACTATGATGACCTCTCACCTAACATTATACGCTCAGGACTGAAAGAGCTACATAACATGCTGTATTATCTGACTGGACAGACTTTTGTTTCAGATGTGGAGGTACAGTGGTGCTCTCAGGGAGACCTGCTGGCAGTGGCCGGGATGGAGAGACACGGCCTACCTGCTGACTCAGCCTGTGCCTCCTTAATGAGGAATGCCCTTGTCAAGTTTTACAATGTCCAGGGGGAACATATATACACTTTAGAAACTCCAGCCCAAAGGCCCATTACCACTATTTGCTGGGGTCACAGGGACTCCCGGCTGTTTCTGGCGTGTGGACCAGCCCTGTATGTAGTGCGTGTGGAGCACCGTGTGGCCAGCCTGCAGCTTCTGTGTCAGCAGGGCATTGCCAGTGCTCTTAAAGAGGAGCGAGATGTGGGGAAACTGAACATGCCTTCACTCCTTTGTTCCTACGTTACCACTGCATTCATTCCAACTATCAAGCCCCCCATCCCTGATCCGAACAACATTAGAGACTTTGTGAGCTATCCCACAGCAGGGAATGAACGGCTGCACTGCACTATGAAACGTTCAGAGGAGAACCCAGAGGCAGGAGGCCCCTGTTACACCCTCTATCTGGAACACCTGGGAGGTCTGGTGCCTATTCTCAAGGGCCGTCGCATTAGCAAACTGCGACCAGAGTTTGTCATTATGGACCCAAAAATGGATGGTAAAGCAGATGAGGTCTGTGTAAATGGCATGATCTCCTATATGACTGACAGCTGTAATTGCTCAGACTCAAGCGATATTGAGTTGAGTGATGAGTGGGTTGGGCGAAAGTCGCCAAAACTTTCCAGAGGAAACAGGTCTCCTAAGCTTCCTAGGTACTCTAAACATATAAGATTACCAAAGAAGGCTGCAGTTCGGTCTCCAAGTCTTACTCGAAGGGAATTTTCAGTTGATGGCTTTAGTGAGCATAATTACTTAGCCCAGGTCACCTCTAACATCTGGGGAACAAAGTTTAAGATTGTGGGCCTAGCTTCCTTTTTGCCAGCTAACTTAGGAGCAGTTATTTATAAAACTAGTTTGCTGCACCTGCAACCTCGTCAGATGACCATCTATTTGCCTGAGGTGCGTAAAATTTCCTTGGACTTCATGAGCCTCCCAGTCTTCAATCCCAATGTGTTCAGTGAAGATGAAGATGATTTACCTGGGTATGCTACTCTGTCCATCCATCAATTACAGCTGATGCCTCAAATTCCTCATCCAGACCAGCCACCAGATAGAGGAGAACAAGTGCTTCCTCTGAAGGTTCCCTCACGACCACAGTCATTTATTGAAACTGACACTCTTGAGGTCCAGATGCGCAAGGTAAACCCTCCACCACCTTACCCAGGTACAGTGGTATCTGCTGCAGCCGCCGCACCCAGTACGGCACCTCCAGGTCTTCTTGTTAGTAATGAGAATGGCACTACGCTGACAACAGATCCATGTTTAACTAAGGACGAATTCTCTCTTCATCCAATTGGGCTCCAGTATCCAACTCCATTAGGCTATGAAAGAATCACCACGTTTGACAGCAGCGGAAATGTCGAAGAGGTGTGTCGCCCAAGGAGACGCCTGTTAAGGAACCAAAATGCCTATGGGATTCAAGGAATGGGTAGCTCCGCCACGTTGAAAGTAACTTCATCTGAGAACAAGAAAGTCCAGTTGCCATACAGCTCAGCAACTCTGAGTCGCCTCTCAGTGCCTAGATATTCTATACCAAGCGGAGACCCACCACCATATCCAGACACATCAAACCAGATGAACACAATCAGAAGTCCTACACAGAGGATTGACAGCAGTTTGATTCATGCCACTTTGCGTCGGGATAGAAGGGAACTGACCCTGAAGGTTTCTCAAATGGTGGACACAGTGAGGACTCTACCAACAAAATCCAAAATGAATGGTTCTCTTACGCTCTCCTATCAGCCAAGGATACCCACAGCTTTGTATACTTGCACTCAGTGTAGCAGTAACAGCAGCAGCACTAGTGTAAGTGTCACCGGTGGTGGCACCAACAGCAGTGGAATTGCTGGAGGAACTGTGGTGAGGCAAGACTTCCCACCTGGCAAAGGGGCCCAACACAGCACTATAATTGTGCACTCCAAAAGTGCTTCACCATTAGCTTCCCAGTCCTCCTATAACCTCCTAAGTCCCATTGACAACAGTAGAGACAGAACTGTCTATGTGAACTCTGCCTTTACGGAAGACGAGACACTTAGTCAGCAGTGCCATCTTGAAAAGTCAGTACGGCATTTAACACTAGGAGATGTCAATTTAACAGTCAAACGACCTCCACCTTACCAATGGGACTCTCCTGCAGCAGAACAACTCTGGATACCTCAAGAGCAAAATTTGTTGCCTGGACCTCCAGGACCACCTCATAAGCCACCACCATTTATACTTGGCCAAACACAGCACTTAGACATGACCCGGCTACCTTTTGTCCTTTCAACAAAGCCTCCCCCTAGTCCCAGTTCTATGACCCTCCCTTCAGCTTATCAGTTATCCCTTTCACCCTTCCCACCGGTGGTAGGTCATGGTGGACCTCAACTACAGCCTTTGCAGAGTCCTGCACAACCATGTGGCCCCAATGACATTGTAACATCTAGCCCTTTCAGCCAACCAGACCCAACGTTAGTCCTACCCCCAGGTTATCCCACTAATTTGACCAATCTAGGTTGTTGCACTCTGCCACCTATGTACCCAGGGACAAGCTCCTGTAACAACCTTCAGCTGCATCCAATGAGCTTGCATCCTTGGAGCACATATAGCACTTGCCCTCCCATGCCAGACCATTCTTCCACACTGCCTAAATCTGGGGATAGCTTTCAGGATCAGTCCTCTCTCAATGAGAGTCCACAAGGAGCAGAGAGGTTCAGCAAAAAGGGGCGTAAGAGGCTTGACAGTAGGGCAGAAGAGGCCAACATGTCTGGAGTCTCTGAAGGGAAATCTAAAAAAGAAAGTCGCACACTCTCTGACTTCAATTCCCTGATCTCTAGCCCAAGACTTGGCAGCAGGGAAAAGAAGAAGCCTAAAGGACAGAAAGAGCCATTGAACAAGGCCAAGAAACTGAGTAGGACCTCCAATGAGTTCCAGGACAGCTCAGAAAGTGAGCCTGAGCTCTTTATTAGTGGTGATGAGTTGATGAACCAAAGCCAGAGCAGCAAGAAAGGATGGAAGAGCAAACGCAATCTGCGTACGGCAAACGAACTTGAGGAAATCAAGTGCCGCAAAGCTAATGAGAGAGAGGATCGTAGTCTTGGCAGCCAAGGCTTTGTTTATGTCATGGCCAACAAGCAGCCATTGTGGAATGAAGCCACCCAGGTTTACCAACTTGACTTTGGAGGACGGGTGACACAAGAGTCAGCCAAAAACTTTCAGATTGAGCTTGACGGACGCCAGGTAATGCAGTTTGGCAGAATCGATGGCAATGCATACATCCTGGATTTTCAGTATCCATTCTCTGCGGTACAGGCATTTGCTGTGGCCTTGGCCAATGTCACTCAGAGACTTAAATAGAAAACCTCTCCAGCAATCTTGTCCATGAGAACAGATGGACTGAAAAAGAAATTATTGTTGACTGCAGATTGTGAGAAATGTAACAGTCTCTGCTGCCATGATGTCTGTGCAGTGCCGGTTAGTAGCCGAGAGATCTGGTCACTCTCAGGCAGAACGTACACGAGACGTACACAGGTGGTCTGACAGTAGATTTAGTGCTTTAAAGTACCTTTTTGTTTACAGAGGTACAAGCTGATTTAAGGTTCCACCTTAAAGGTGGTACACATCTGAACAAAAAAAGTTAAGTGTTATGTATTGATGGAATATTATTTCATTCATGAATTCAATTTTATTGATTTTTTTTCCATGTATTTCATTAATGGTGTGATTTAAATGTAAAGGTAATTACTAAAATCTAAGATGGACGTTAGATTATGGGCTTTATTTTTTCCTTTGATATCCCCACCTCCTTTTTTGTTTATTCCTGAGATTTATATGTGCCAAATTTAGATTTCCTATGTACAATCCTTGTAAAGTGATGGATTTTTAACTATTGTTTGTGGTCAGTAATTCAATGAAATCTAGAGAGGAAAAAAATGTTTGAATATTCATCCCATGACTCACTTCCATGAAGTGAAAACCGAGATAATATATTCCAGTTATCATCATATTTTCCAAGTTGTGCCATAATGAATGCATTTTTTATGGTTTAAAAAAAAATCTATTTAACTTTGTTCTTCACAAAATGTCTTAGTTATATTGCATTATTTGCACACTGTGTTTTTTCAGTAATCTCAGTAATGTCCTTTTTGAACAAATCTTTGCTTTTAAATGTTAACAGTAAGTAACAGAAATCAAAGTTTCAACATTTTTTAAAATTAGTTTCAAATATATTATATTGTCATTGTCATGTAAGTGACATGACAGAAGTGCTGTAGTTAGATGTACTTAAAAAATTTACTTATATTGTTCATGACAATTTAGCACGAACTATATAGTATGCATTAATTTAGACAAAAAAAAAATGTCATATCAATATATAAATCAAATTTAATACACTGTATATTATGCAATGAATGGAATCTAAATTAAATTTAAAGTTGATATGTAGTTTTCGCATTCCTAAGTTAAATAGTCAACCCCAATTGCTTAGTTTGGTTTATGTGAAGAGACATCTTTTATTGTATTCAGTCTAATTTGCTTAATATTTATTTTTCTGTATTAATATTTAATATTCTGCATCATATTTAATATTTCTTACAGCAAATCAGCTAATTGATTTGTCTGTTGTTGCTTAGCTTCTGATGTTTTCCAGTAGTTTCATCAGTTTTAATCACATTTTTGTTGTAAGCCAAACAGTGGTTCAAAGTGGGGTAGTGTTGATATGGTTGACGTTTTGAGCACTTCATATTCTAGATGTTGTATGCTTTGATGATTTGCAGTTGCAGTTATTTATAGCCACTTTGTACTGGGAGATTCAGGCCCAGTTTAAATAATGTGGAATGTGAGGCTTTAACTGTGCTTTATTGCTAAATTATTCTGATGTACATTTACAAAATGTCTTATAAGGGTGTCTTGAAAAAGCATTAGAATGTGTGTGCAGAGTAGGCTTTAAGTCACTAA

Function

symbol description
tulp4 Predicted to be involved in protein ubiquitination. Located in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000310_02793777_02805490.mRNA True 5976 mRNA 0.44 16 2793777 2807092

Neighbor

gene id symbol gene type direction distance location
CI01000310_02789811_02790561 MYCT1B, MYCT1 coding upstream 2697 2789530 ~ 2791080 (+)
CI01000310_02658724_02665972 CCDC170 coding upstream 127598 2658724 ~ 2666179 (+)
CI01000310_02639022_02649415 NA coding upstream 144111 2639022 ~ 2649666 (+)
CI01000310_02572928_02575251 FBXO30A, FBXO30 coding upstream 218421 2572928 ~ 2575356 (+)
CI01000310_02562834_02569144 NA coding upstream 224520 2562389 ~ 2569257 (+)
CI01000310_02810800_02814032 SLC18B1 coding downstream 3217 2810309 ~ 2814084 (+)
CI01000310_02823791_02825399 NA coding downstream 15545 2822637 ~ 2825761 (+)
CI01000310_02861303_02864477 NA coding downstream 53483 2860575 ~ 2865057 (+)
CI01000310_02876181_02939106 CDC42BPA coding downstream 69089 2876181 ~ 2939106 (+)
CI01000310_03054431_03066827 EDRF1 coding downstream 247339 3054431 ~ 3067384 (+)
G440427 NA non-coding upstream 117278 2675300 ~ 2676499 (+)
G440423 NA non-coding upstream 135939 2657601 ~ 2657838 (+)
G440401 NA non-coding upstream 140383 2652439 ~ 2653394 (+)
G440420 NA non-coding upstream 158316 2635200 ~ 2635461 (+)
G440419 NA non-coding upstream 160578 2632896 ~ 2633199 (+)
G440472 NA non-coding downstream 19657 2826749 ~ 2827136 (+)
G440477 NA non-coding downstream 38831 2845923 ~ 2847548 (+)
G440483 NA non-coding downstream 47904 2854996 ~ 2855588 (+)
G440623 NA non-coding downstream 242418 3049510 ~ 3049788 (+)
G440533 NA non-coding downstream 288899 3095991 ~ 3098488 (+)
G439845 NA other upstream 881360 1911601 ~ 1912417 (+)
CI01000310_01508712_01511125 FAM167A other upstream 1280436 1508341 ~ 1513341 (+)
CI01000310_01207513_01226750 CDC5L other upstream 1554372 1207057 ~ 1227194 (+)
G439115 NA other upstream 2102585 651976 ~ 653356 (+)
CI01000310_00648731_00650082 NAPB other upstream 2144224 648566 ~ 650159 (+)
G440505 NA other downstream 292325 3099417 ~ 3136328 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G100396 NA non-coding NC_048565.1 CM023219.2 90967654 ~ 90968153 (-)
mexican tetra (Astyanax mexicanus) G82853 tulp4,LOC108428686,LOC107589648,LOC107734174,LOC107692724,LOC107742753,LOC107653590 unknown NC_035905.1 CM008308.1 24139389 ~ 24142232 (+)