G438834


Basic Information

Item Value
gene id G438834
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000310
NCBI id null
chromosome length 5141163
location 53192 ~ 53459 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU503653
TGCGCAGCCATAAAAGAAAGATCCATGATGATCTGGTGTGTTTAATTCCTGGATGAAGTATTTCTTCAGCTCCTCGTGGGATTTTCACAGCAGGTTTCCTGACTCCAGACGTCCACAGAGTTCATCCTTACAGATCCATAGTTGAAGACAGAAATCTTGAACGAGTCGACGTGGAGAGAGCAGGACAAAGAGAGAAAACACCAATGTTGTGGCTGCGAGAGACTCTCTGTGTTCCTCTCATACACTCACTCTCACTCGTCCACTCTCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU503653 True 268 lncRNA 0.46 1 53192 53459

Neighbor

gene id symbol gene type direction distance location
CI01000310_00003244_00012743 NA coding upstream 40278 3244 ~ 12914 (+)
CI01000310_00138858_00147748 NA coding downstream 85088 138547 ~ 147755 (+)
CI01000310_00215248_00279025 SNTG2 coding downstream 161789 215248 ~ 279648 (+)
CI01000310_00298547_00317035 NA coding downstream 245088 298547 ~ 318355 (+)
CI01000310_00495852_00504711 NA coding downstream 442393 495852 ~ 504711 (+)
CI01000310_00513998_00524767 HAO1 coding downstream 460539 513998 ~ 525606 (+)
G438832 NA non-coding upstream 3220 49772 ~ 49972 (+)
G438828 NA non-coding upstream 9658 42395 ~ 43534 (+)
G438825 NA non-coding upstream 17008 35891 ~ 36184 (+)
G438824 NA non-coding upstream 19400 33017 ~ 33792 (+)
G438823 NA non-coding upstream 21238 31419 ~ 31954 (+)
G438847 NA non-coding downstream 8126 61585 ~ 61974 (+)
G438881 NA non-coding downstream 80603 134062 ~ 134390 (+)
G438913 NA non-coding downstream 176337 229796 ~ 231369 (+)
G439052 NA non-coding downstream 363157 416616 ~ 419017 (+)
CI01000310_00648731_00650082 NAPB other downstream 595107 648566 ~ 650159 (+)
G439115 NA other downstream 596499 651976 ~ 653356 (+)
CI01000310_01207513_01226750 CDC5L other downstream 1168547 1207057 ~ 1227194 (+)
CI01000310_01508712_01511125 FAM167A other downstream 1448427 1508341 ~ 1513341 (+)
G439845 NA other downstream 1858142 1911601 ~ 1912417 (+)

Expression


Co-expression Network